JinmiaoChenLab/GraphST

Issues

• vertical and horizontal integration of multiple tissue slices

  #39 opened 3 months ago by huixiaaaa
  0

• Normalization issue on Stereo-seq tutorial

  #38 opened 3 months ago by tvegawaichman
  0

• Model Implementation Appears to Differ from Publication

  #37 opened 4 months ago by zdanaceau
  0

• Adaptation for VisiumHD?

  #30 opened 4 months ago by Rafael-Silva-Oliveira
  1

• where can i get Mouse embryo dataset?

  #36 opened 5 months ago by amssljc
  1

• Maximum number of cells tested by GraphST

  #35 opened 5 months ago by rocketeer1998
  1

• Email address update

  #33 opened 6 months ago by longyahui
  0

• Question regarding normalization

  #16 opened 10 months ago by tvegawaichman
  3

• No file as scalefactors_json.json

  #25 opened 8 months ago by mangochiral
  2

• specify batch size

  #34 opened 6 months ago by jairaj-mathur
  1

• Question with mouse olfactory bulb Stereo-seq data

  #23 opened 9 months ago by zhaozhenxing0
  2

• take 3D spots position into account

  #32 opened 7 months ago by wanghf810501
  1

• Question for integrating different sources of ST and scRNA-seq data

  #29 opened 8 months ago by Fanyu000
  2

• Latent Representation for Silhouette Score to Determine Number of Clusters

  #31 opened 7 months ago by Radwaadel267
  6

• Question about why the cluster number is set to 22 when clustering the mouse embryo dataset

  #24 opened 8 months ago by tqwang743
  1

• Use latent embeddings for clustering

  #27 opened 8 months ago by aelhossiny
  1

• Can GraphST be applied for merfish?

  #28 opened 8 months ago by Byronxy
  1

• Does GraphST work on M2 Mac?

  #22 opened 9 months ago by dolchan
  2

• TypeError: invalid data type for einsum"

  #26 opened 8 months ago by aelhossiny
  1

• why deconvolution for adata_sc?

  #21 opened 10 months ago by UnseenAnchor
  1

• The lack of spatial location information in dataset

  #19 opened a year ago by tqwang743
  2

• clustering bug

  #17 opened a year ago by wdb-web
  1

• Question about learning the mapping matrix for scRNA-seq and ST data integration(equation 9 and 10 in paper)

  #18 opened a year ago by UnkownNames
  1

• How to use mclust as clustering method

  #20 opened 10 months ago by ShaowenJ
  1

• Is mclust supposed to be slow?

  #15 opened a year ago by peterkilfeather
  0

• GraphST with multiple samples, general question

  #14 opened a year ago by kguion1
  3

• The reproduction results of the DLPFC dataset are inconsistent with those recorded in the paper

  #13 opened a year ago by JingofGao
  0

• GraphST for horizontal integration

  #12 opened a year ago by ciciQ777
  2

• Question Regarding Distance obsp

  #11 opened a year ago by tvegawaichman
  2

• Question with horizontal integration

  #10 opened 2 years ago by RubyLiu-2
  1

• Color error in sc.pl.embedding()

  #9 opened 2 years ago by Tripfantasy
  1

• issues with installation

  #8 opened 2 years ago by JLiLab
  5

• Question for hyperparameters

  #6 opened 2 years ago by zy-fang
  2

• The different results when i tried to cluster DLPFC with GraphST

  #7 opened 2 years ago by tqwang743
  3

• Cannot find file scalefactors_json.json when running tutorial 1.

  #5 opened 2 years ago by JINJINT
  2

• Question for Github Code License

  #3 opened 2 years ago by JianingYao
  1