wmsci's Stars
prettier/prettier
Prettier is an opinionated code formatter.
exaloop/codon
A high-performance, zero-overhead, extensible Python compiler using LLVM
astral-sh/rye
a Hassle-Free Python Experience
cocktailpeanut/dalai
The simplest way to run LLaMA on your local machine
webpro/awesome-dotfiles
A curated list of dotfiles resources.
mamba-org/mamba
The Fast Cross-Platform Package Manager
dylanaraps/pure-sh-bible
📖 A collection of pure POSIX sh alternatives to external processes.
kassambara/ggpubr
'ggplot2' Based Publication Ready Plots
immunogenomics/harmony
Fast, sensitive and accurate integration of single-cell data with Harmony
Stardust-kyun/dotfiles
Calla Desktop Environment
Teichlab/scg_lib_structs
Collections of library structure and sequence of popular single cell genomic methods
FelixKrueger/Bismark
A tool to map bisulfite converted sequence reads and determine cytosine methylation states
ncborcherding/scRepertoire
A toolkit for single-cell immune profiling
rpetit3/fastq-dl
Download FASTQ files from SRA or ENA repositories.
slowkow/awesome-vdj
📚 Tools and databases for analyzing HLA and VDJ genes.
kyclark/biofx_python
Code for Mastering Python for Bioinformatics (O'Reilly, 2021, ISBN 9781098100889)
COMBINE-lab/alevin-fry
🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transcriptomics and feature barcoding.
dzhang32/ggtranscript
Visualizing transcript structure and annotation using ggplot2
tiagoantao/biopython-notebook
Notebooks to introduce biopython
pachterlab/seqspec
machine-readable file format for genomic library sequence and structure
PF2-pasteur-fr/SARTools
Statistical Analysis of RNA-Seq Tools
tanaylab/metacells
Metacells - Single-cell RNA Sequencing Analysis
mritchielab/long_read_tools
A catalogue of available long read sequencing data analysis tools
combiz/scFlow
Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.
nf-core/spatialvi
Pipeline for processing spatially-resolved gene counts with spatial coordinates and image data. Designed for 10x Genomics Visium transcriptomics.
exaloop/seq
Codon's bioinformatics module
KatrionaGoldmann/volcano3D
An R package to plot interactive three-way differential expression analysis
hasaru-k/GlimmaV2
interactive plots for differential expression analysis
pblumenkamp/GenExVis
An application for exploring and visualizing differential gene expression data created with DESeq2
wckdouglas/bio-tools