wrightdw

wrightdw's Stars

• kedro-org/kedro

  Kedro is a toolbox for production-ready data science. It uses software engineering best practices to help you create data engineering and data science pipelines that are reproducible, maintainable, and modular.

  Language:Python10.2k1072.1k921

• lh3/seqtk

  Toolkit for processing sequences in FASTA/Q formats

  Language:C1.4k62176308

• BlakeRMills/MetBrewer

  Color palette package in R inspired by works at the Metropolitan Museum of Art in New York

  Language:R1.1k71984

• cov-lineages/pango-designation

  Repository for suggesting new lineages that should be added to the current scheme

  Language:Jupyter Notebook1k792.4k99

• theislab/scvelo

  RNA Velocity generalized through dynamical modeling

  Language:Python42613806105

• theislab/cellrank

  CellRank: dynamics from multi-view single-cell data

  Language:Python367873348

• theislab/scarches

  Reference mapping for single-cell genomics

  Language:Jupyter Notebook3481217752

• theislab/scgen

  Single cell perturbation prediction

  Language:Python27998055

• theislab/dca

  Deep count autoencoder for denoising scRNA-seq data

  Language:Python252116069

• PitchInteractiveInc/tilegrams

  Make hexagonally tiled cartograms

  Language:JavaScript217111249

• dnanexus/UKB_RAP

  Access share reviewed code & Jupyter Notebooks for use on the UK Biobank (UKBB) Research Application Platform. Includes resources from DNAnexus webinars, online trainings and workshops.

  Language:Jupyter Notebook152201150

• theislab/sfaira

  data and model repository for single-cell data

  Language:Python136835111

• CDCgov/MicrobeTrace

  The Visualization Multitool for Molecular Epidemiology and Bioinformatics

  Language:TypeScript911782741

• phe-genomics/variant_definitions

  6819

• FlowmapBlue/flowmapblue.R

  Flowmap.blue widget for R

  Language:R57101112

• artic-network/civet

  Cluster Investigation & Virus Epidemiology Tool

  Language:Python50812814

• epi2me-labs/tutorials

  Language:Jupyter Notebook4882022

• theislab/tcellmatch

  Language:Python37937

• cmzmasek/forester

  forester is a collection of open source libraries of Java and Ruby software for phylogenomics and evolutionary biology research

  Language:Java3672015

• dashboarddesignpatterns/dashboarddesignpatterns.github.io

  Language:HTML33204

• plotly/dash-phylogeny

  Interactive phylogeny trees with Dash

  Language:Python2313117

• gitter-lab/ssps

  Sparse Signaling Pathway Sampling: MCMC for signaling pathway inference

  Language:Julia145150

• darwinjob/pyramidio-bioformats

  Image pyramid reader and writer enhanced with bio-formats library reader

  Language:Java132146

• COG-UK/datapipe

  Nextflow implementation of grapevine

  Language:Nextflow86313

• LearningFromUsersWorkshop/LearningFromUsersWorkshop.github.io

  Language:CSS7103

• ConesaLab/Padhoc

  Text mining tool for biological pathways reconstruction

  Language:Python6400

• ConesaLab/MirCure

  microRNA quality control, filter, and curation.

  Language:R5200

• draeger-lab/SBMLsqueezer

  Context-sensitive creation of kinetic equations in biochemical networks

  Language:HTML46120

• acavelan/openmp_course_2021

  Language:Fortran12

• bblankinship/HDS-AY-2021-22-April

  Course teaching repository for the Health Data Science Course AY 2021-22, April intake

  Language:HTML1