Wellcome Trust Sanger Institute - Human Genetics Informatics
Analysing genomic data at scale for the Human Genetics Program
Cambridge, UK
Pinned Repositories
docker-proxify
Allows building and running docker container images from behind a corporate proxy
gatk-cwl-generator
Generates CWL files from the GATK documentation
go-softpack-builder
Go implementation of a softpack builder service
hail_analysis_pipelines
Hail based analysis pipelines for HG projects
ibackup
Performant backups of many files to iRODS
nextflow-pipelines
Nextflow HGI pipelines
openconnect-proxy
Provide an authenticated http proxy that provides connectivity via an OpenConnect VPN client (to connect to a compatible AnyConnect VPN server)
softpack-core
SoftPack Core
softpack-web
Softpack Web provides a graphical user interface for Softpack services.
yascp
scRNA multimodal analysis pipeline utilised for large dataset processing
Wellcome Trust Sanger Institute - Human Genetics Informatics's Repositories
wtsi-hgi/cwl-dummy
Generates CWL files that do nothing.
wtsi-hgi/common-workflow-language
Repository for the CWL standards. Use https://www.biostars.org/t/cwl/ for support š
wtsi-hgi/hgi-registry-frontend
Client for the HGI Registry API
wtsi-hgi/bindmapfuse
wtsi-hgi/ansible-aptly-modules
Ansible modules for managing Aptly
wtsi-hgi/hgi-registry
Human Genetics Programme project and team group registry API
wtsi-hgi/gatk-1
Official code repository for GATK versions 4 and up
wtsi-hgi/ansible-style-guide
Style guide for writing Ansible
wtsi-hgi/python-cwlgen
Generation of CWL programmatically. Available types: CommandLineTool and DockerRequirement
wtsi-hgi/gatk-cwl-generator
Generates CWL files from the GATK documentation
wtsi-hgi/htslib
C library for high-throughput sequencing data formats
wtsi-hgi/www-hierarchical-fairshare
Tools to view LSF hierarchical fairshare UserGroup shares and current priority (e.g. in a treemap)
wtsi-hgi/unjsify_cwl
Converts CWL Inline Javascript expressions into explicit processing steps
wtsi-hgi/schema_salad
Semantic Annotations for Linked Avro Data
wtsi-hgi/go-ceph
Go bindings for RADOS, RBD, and CephFS
wtsi-hgi/ansible
Ansible is a radically simple IT automation platform that makes your applications and systems easier to deploy. Avoid writing scripts or custom code to deploy and update your applicationsā automate in a language that approaches plain English, using SSH, with no agents to install on remote systems.
wtsi-hgi/ansible-fluentd
Ansible role : install and configure fluentd
wtsi-hgi/ansible-docker-kibana
Ansible role for configuring Kibana + Search Guard Plugin to run in Docker
wtsi-hgi/docker-elasticsearch
Ansible role for configuring Elasticsearch with Search Guard to run in Docker
wtsi-hgi/async-test
Asynchronous testing decorator for Python projects
wtsi-hgi/ansible-logrotate
Ansible Galaxy role to setup logrotate and additional rotation scripts
wtsi-hgi/ansible-conda
An Ansible module for managing Python packages via Conda
wtsi-hgi/composer
Visual and code editor for Common Workflow Language
wtsi-hgi/yatadis
Yet Another Terraform Ansible Dynamic Inventory Script (yatadis)
wtsi-hgi/samtools
Human Genetics Informatics repository for samtools (not official release)
wtsi-hgi/terraform-provider-openstack
Terraform OpenStack provider
wtsi-hgi/packer
Packer is a tool for creating identical machine images for multiple platforms from a single source configuration.
wtsi-hgi/ep_html_export_using_client_filters
Etherpad Lite plugin to allow use of client-side filters for HTML export (generates messier HTML, but allows plugins like ep_doi and ep_pubmed to work for HTML export)
wtsi-hgi/supergiant
Automatically scale hardware and easily run stateful applications using Kubernetes.
wtsi-hgi/ansible-supergiant
Ansible role for configuring Supergiant