Wellcome Trust Sanger Institute - Human Genetics Informatics
Analysing genomic data at scale for the Human Genetics Program
Cambridge, UK
Pinned Repositories
docker-proxify
Allows building and running docker container images from behind a corporate proxy
gatk-cwl-generator
Generates CWL files from the GATK documentation
go-softpack-builder
Go implementation of a softpack builder service
hail_analysis_pipelines
Hail based analysis pipelines for HG projects
ibackup
Performant backups of many files to iRODS
nextflow-pipelines
Nextflow HGI pipelines
openconnect-proxy
Provide an authenticated http proxy that provides connectivity via an OpenConnect VPN client (to connect to a compatible AnyConnect VPN server)
softpack-core
SoftPack Core
softpack-web
Softpack Web provides a graphical user interface for Softpack services.
yascp
scRNA multimodal analysis pipeline utilised for large dataset processing
Wellcome Trust Sanger Institute - Human Genetics Informatics's Repositories
wtsi-hgi/python-hgijson
Python library for easily JSON encoding/decoding complex class-based Python models, using an arbitrarily complex (but easy to write!) mapping schema.
wtsi-hgi/ansible-fluent-bit
Ansible role for Fluent Bit
wtsi-hgi/python-capturewrap
Wraps callables to capture stdout, stderr, exceptions and the return
wtsi-hgi/secrets
A command line based secrets manager
wtsi-hgi/ansible-role-systemd-service
Register services to systemd.
wtsi-hgi/baton
iRODS client programs and API
wtsi-hgi/bissell
Dummy iRobot server for client testing
wtsi-hgi/capmq
Simple program to cap mapping quality in a given alignment file
wtsi-hgi/consul-template
Template rendering, notifier, and supervisor for @HashiCorp Consul and Vault data.
wtsi-hgi/cwl2nxf
Import a CWL workflow specification to Nextflow script (experimental)
wtsi-hgi/docker-python-subrepo
Docker image with Python and Git Subrepo
wtsi-hgi/docker-see-tree
Produces a diagram of the files in a given directory in a pdf
wtsi-hgi/gatk-protected
GATK Official Release Repository: contains the core MIT-licensed GATK framework, plus "protected" tools restricted to non-commercial use only
wtsi-hgi/GGR-cwl
CWL tools and workflows for GGR
wtsi-hgi/gitlab-runner-canary
wtsi-hgi/go-infoblox
Golang Infoblox WAPI Library
wtsi-hgi/hail
Scalable genomic data analysis.
wtsi-hgi/htslib-plugins
Plugins for use with HTSlib
wtsi-hgi/jinjath
Jinja Template Helpers
wtsi-hgi/mattermost-integration-gitlab
Send events from Gitlab to Mattermost through webhooks
wtsi-hgi/netlib-java
wtsi-hgi/python-common
[DEPRECATED] Python 3 common library
wtsi-hgi/python-temp-helpers
Python library to help with using temp files and directories
wtsi-hgi/python-test-helpers
Python library to help with creating tests
wtsi-hgi/ssh-keydgen
Generate Deterministic SSH keys
wtsi-hgi/tardis
Toolkit for automated and rapid discovery of structural variants
wtsi-hgi/terraform
Terraform is a tool for building, changing, and combining infrastructure safely and efficiently.
wtsi-hgi/terraform-provider-infoblox
Infoblox plugin for Terraform
wtsi-hgi/xadder
Open source tool for working with XAD files
wtsi-hgi/yaosadis
Yet Another OpenStack Ansible Dynamic Inventory Script