wwliao

wwliao's Stars

• complextissue/pytximport

  Feature-rich Python implementation of the tximport package for gene count estimation.

  Language:Python301

• MariaNattestad/Ribbon

  A genome browser designed for complex structural variants and long reads.

  Language:JavaScript27330

• rasbt/LLMs-from-scratch

  Implement a ChatGPT-like LLM in PyTorch from scratch, step by step

  Language:Jupyter Notebook36.2k4.5k

• PacktPublishing/Deep-Learning-with-PyTorch-Lightning

  Getting Started with PyTorch Lightning, Published by Packt

  Language:Jupyter Notebook15384

• deep-learning-with-pytorch/dlwpt-code

  Code for the book Deep Learning with PyTorch by Eli Stevens, Luca Antiga, and Thomas Viehmann.

  Language:Jupyter Notebook4.8k2k

• rasbt/stat453-deep-learning-ss20

  STAT 453: Intro to Deep Learning @ UW-Madison (Spring 2020)

  Language:Jupyter Notebook562161

• rasbt/machine-learning-book

  Code Repository for Machine Learning with PyTorch and Scikit-Learn

  Language:Jupyter Notebook3.7k1.3k

• jmschrei/tangermeme

  Biological sequence analysis for the modern age.

  Language:Python19912

• bentrevett/pytorch-seq2seq

  Tutorials on implementing a few sequence-to-sequence (seq2seq) models with PyTorch and TorchText.

  Language:Jupyter Notebook5.4k1.3k

• HazyResearch/hyena-dna

  Official implementation for HyenaDNA, a long-range genomic foundation model built with Hyena

  Language:Assembly61885

• vsbuffalo/granges

  A Rust library and command line tool for working with genomic ranges and their data.

  Language:Rust986

• brentp/smoove

  structural variant calling and genotyping with existing tools, but, smoothly.

  Language:Go23921

• greyhatguy007/Machine-Learning-Specialization-Coursera

  Contains Solutions and Notes for the Machine Learning Specialization By Stanford University and Deeplearning.ai - Coursera (2022) by Prof. Andrew NG

  Language:Jupyter Notebook4.2k2.5k

• RCollins13/HumanIdiogramLibrary

  Resource of human chromosome schematics & images

  9211

• friend1ws/nanomonsv

  SV detection tool for nanopore sequence reads

  Language:Python8912

• rougier/conference-posters

  A collection of conferences posters (with sources) made with Pages

  25

• human-pangenomics/hpp_pangenome_resources

  1013

• lh3/miniprot

  Align proteins to genomes with splicing and frameshift

  Language:C34018

• lh3/pangene

  Constructing a pangenome gene graph

  Language:C1759

• joelgrus/data-science-from-scratch

  code for Data Science From Scratch book

  Language:Python8.8k4.5k

• ageron/handson-ml3

  A series of Jupyter notebooks that walk you through the fundamentals of Machine Learning and Deep Learning in Python using Scikit-Learn, Keras and TensorFlow 2.

  Language:Jupyter Notebook8.1k3.3k

• pangfengliu/Cplusplus-refactor

  Code from my C++ refactor book

  Language:C++9313

• at-cg/PanAligner

  Long read aligner for cyclic and acyclic pangenome graphs

  Language:C364

• cucapra/pollen

  generating hardware accelerators for pangenomic graph queries

  Language:Rust352

• treyhunner/resume

  LaTeX resume format

  Language:TeX276137

• owkin/PyDESeq2

  A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.

  Language:Python60669

• cartoonist/pystream-protobuf

  Python implementation of stream library for streaming google protocol buffer objects

  Language:Python4214

• ericmjl/bayesian-analysis-recipes

  A collection of Bayesian data analysis recipes using PyMC3

  Language:Jupyter Notebook554111

• helblazer811/ManimML

  ManimML is a project focused on providing animations and visualizations of common machine learning concepts with the Manim Community Library.

  Language:Python2.4k146

• pachterlab/gget

  🧬 gget enables efficient querying of genomic reference databases

  Language:Python95975