zd1/telseq

Issues

• Short telomere length output - NovaSeq samples

  #33 opened 3 years ago by kacyng92
  2

• -u and -m flag output unclear; ideal k for read length of 150bp

  #37 opened 2 years ago by kruthikaiyer0990
  1

• Can TelSeq be used for long read data (eg. PacBio HiFi)?

  #36 opened 2 years ago by artorias111
  0

• non-human species

  #35 opened 2 years ago by guandailu
  0

• Hg38 (GRCh38) Bam file

  #34 opened 2 years ago by Ruotian1412
  0

• TelSeq does not compile with modern versions of bamtools

  #29 opened 5 years ago by stephan-hutter
  1

• LENGTH_ESTIMATE units

  #8 opened 6 years ago by JenniferShelton
  6

• version of software doesn't match repo tag

  #32 opened 4 years ago by keiranmraine
  3

• telseq on cram files

  #26 opened 6 years ago by jalwillcox
  2

• Telseq for DNBseq

  #31 opened 4 years ago by tomoconaka
  0

• Secondary and supplementary reads

  #30 opened 4 years ago by lindenb
  0

• Estimating telomere length for other organisms

  #11 opened 8 years ago by danshu
  6

• Error while using a list of paths

  #28 opened 5 years ago by wbh0912
  0

• Adaption of repeats

  #27 opened 5 years ago by emmannaemeka
  0

• Compilation problem

  #15 opened 6 years ago by berntpopp
  5

• Quick question: counting of aligned vs unaligned reads

  #21 opened 6 years ago by jamesdalg
  1

• location of files needed if bamtools path is not functioning

  #20 opened 6 years ago by jamesdalg
  3

• -m leads to 0 reads mapped in output

  #25 opened 6 years ago by kgaonkar6
  3

• telseq on exome sequencing data

  #7 opened 6 years ago by ikramu
  4

• Bamtools installation location

  #10 opened 6 years ago by lachlansimpson
  9

• Deploy in unix cluster

  #14 opened 6 years ago by kruthikaiyer0990
  1

• Can telseq be used for custom panels?

  #18 opened 6 years ago by dilmiperera
  1

• Recommendation of k for 35bp and 49bp reads

  #19 opened 6 years ago by SiyangLiu
  3

• Any Way to Use Telseq to find other repeats?

  #22 opened 6 years ago by jerryyyyy
  0

• Weighted means

  #1 opened 6 years ago by fpbarthel
  4

• Batch effect?

  #2 opened 6 years ago by fpbarthel
  3

• Support for multiple telomeric repeats and faster run time

  #6 opened 6 years ago by fpbarthel
  4

• UNKNOWN length estimate using exome sequencing data

  #9 opened 6 years ago by ikramu
  3

• Use telseq on other genome?

  #13 opened 6 years ago by kumatang
  9

• Why is a BAM file needed?

  #24 opened 7 years ago by pdiakumis
  1

• Docker Version

  #17 opened 7 years ago by jerryyyyy
  5

• Bamtools Not Found

  #16 opened 7 years ago by jerryyyyy
  7

• Error when installing

  #12 opened 8 years ago by danielecook
  4

• Create Release

  #5 opened 9 years ago by danielecook
  2

• Possible to specify custom telomere sequences

  #4 opened 10 years ago by danielecook
  2

• Cannot install on mac

  #3 opened 10 years ago by danielecook
  1