zdk123/SpiecEasi

Issues

• Issue with Sparse Network and Missing Nodes in Spiec-Easi

  #268 opened a month ago by 07Chengran
  3

• Cross-domain analysis with virus and bacteria abundance matrices

  #270 opened 24 days ago by 07Chengran
  0

• Running more than 2 matrices

  #269 opened a month ago by susheelbhanu
  4

• How to filter output the results

  #267 opened a month ago by wfgui
  0

• spiec easi in multiple steps

  #256 opened 6 months ago by gastronaut82
  8

• About getRefit function

  #265 opened a month ago by wfgui
  0

• Error when running adj2igraph on spiec.easi output: Error in t(object) : invalid 'lazy' to R_sparse_transpose()

  #249 opened 10 months ago by wesleysparagon
  8

• Mac M1 / R studio Version 2024.04.2+764 (2024.04.2+764) / R 4.4.1 GUI 1.80 Big Sur ARM build

  #266 opened 2 months ago by madlam-tech
  0

• Problems installing

  #264 opened 2 months ago by jspychalla
  0

• Using relative abundance in spieceasi？

  #263 opened 2 months ago by wfgui
  1

• Using Environmental data

  #262 opened 3 months ago by UhP88
  0

• Using a pre-filtered OTU table based on occurrence and relative abundance in spieceasi

  #261 opened 5 months ago by suahin
  2

• Error 'Csparse_transpose' not found

  #242 opened a year ago by GuillaumeSwB
  6

• Error in i_set_vertex_attr

  #258 opened 5 months ago by kaumudiprabhakara
  5

• Do not run multi.spiec.easi with unidentical sample scheme

  #257 opened 5 months ago by TeeratatK
  3

• R session aborted when using adj2igraph() with the tutorial data and code.

  #259 opened 5 months ago by vicflonun
  1

• How to add positive and negative associatons in the network.

  #260 opened 5 months ago by AlexCJ144
  1

• Unable to Install SpiecEasi

  #225 opened 2 years ago by kbazany
  5

• cross-domain interactions

  #255 opened 6 months ago by gastronaut82
  1

• Constant Crashing with no error codes/etc

  #251 opened 9 months ago by szymanskishay
  1

• I have a question for interpretation of my network results

  #254 opened 7 months ago by Marjan-Ghotbi
  0

• R crashes whenever I run SpiecEasi::symBeta

  #247 opened a year ago by gastronaut82
  4

• Error in installing packages

  #253 opened 8 months ago by jlche
  3

• ncpus not working when use sparccboot in windows.

  #252 opened 8 months ago by 1870694249
  0

• Optimal lambda may be outside the supplied values

  #250 opened 10 months ago by ntromas
  0

• Using SPIEC-EASI on transcriptomic data: plant/microbes

  #248 opened 10 months ago by GossypiumH
  0

• Fix github actions workflow and deprecate travis badges.

  #245 opened a year ago by zdk123
  0

• Coloring plot_network

  #243 opened a year ago by gastronaut82
  3

• Wrong return value in cov2prec()

  #240 opened a year ago by stefpeschel
  2

• treatment of metagemoic data for virus + metabarcoding 16S data for bacteria

  #229 opened a year ago by yannreynaud
  2

• Network with no edges

  #232 opened 2 years ago by minzooey
  1

• Automate spiec-easi for non amplicon data

  #236 opened a year ago by pbelmann
  6

• Can't get network to run even at rep.num=1

  #237 opened a year ago by kkajihara
  3

• Can not install SpiecEasy package on my Macos Ventura.

  #239 opened a year ago by Becheler
  2

• Error installing on macOS Monterey 12.5 Intel based

  #217 opened 2 years ago by LilEigenValue
  6

• R aborts and says "fatal error" and forces session to be restarted

  #238 opened a year ago by kenbyrrrd
  2

• SpiecEasi on conda

  #234 opened a year ago by sghignone
  5

• How can I get edge-weight from Spiec-Easi?

  #235 opened a year ago by scottwlee
  0

• qqdplot_comm() function does not provide expected results

  #233 opened 2 years ago by SarithaKodikara
  0

• caught segfault error on cluster

  #231 opened 2 years ago by GossypiumH
  2

• Set a license

  #228 opened 2 years ago by laurentheirendt
  4

• How to change the output of SpiecEasi into a correlation matrix similar to the downloaded from MENAP ?

  #220 opened 2 years ago by YuZhang-learner
  5

• Error using negative values from SpiecEasi with Fruchterman-Reingold layout

  #221 opened 2 years ago by paddyhooper
  1

• Model selection for rank/beta penalty criterion of the SLR

  #224 opened 2 years ago by erfanshekarriz
  2

• SpiecEAsi documentation

  #223 opened 2 years ago by Valentin-Bio-zz
  1

• Unable to install SpiecEasi (Pulsar is removed from CRAN)

  #227 opened 2 years ago by kawanoii
  2

• error installing via Rstudio

  #222 opened 2 years ago by spencerlong1
  1

• Error installing on RStudio Cloud

  #218 opened 2 years ago by SarithaKodikara
  1

• Query: Applying SpiecEasi network building method at genus or higher taxonomic level

  #216 opened 2 years ago by wasimbt
  4

• Failed to install 'SpiecEasi' from GitHub

  #215 opened 2 years ago by Ruser111
  3