zuber-bioinfo

zuber-bioinfo's Stars

• nf-core/rnaseq

  RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

  Language:Nextflow942157674713

• mikolmogorov/Flye

  De novo assembler for single molecule sequencing reads using repeat graphs

  Language:C79730701169

• vcflib/vcflib

  C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings

  Language:C++62940273221

• twbattaglia/RNAseq-workflow

  A repository for setting up a RNAseq workflow

  Language:R419273182

• metagenome-atlas/atlas

  ATLAS - Three commands to start analyzing your metagenome data

  Language:Python3771543299

• ebi-pf-team/interproscan

  Genome-scale protein function classification

  Language:Java3071832968

• GoekeLab/bioinformatics-workflows

  minimal example implementations for bioinformatics workflow managers

  Language:Python26412246

• OpenGene/AfterQC

  Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data

  Language:Python208204151

• chr1swallace/coloc

  Repo for the R package coloc

  Language:R154415843

• sequana/sequana

  Sequana: a set of Snakemake NGS pipelines

  Language:Jupyter Notebook146759427

• gagneurlab/drop

  Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders

  Language:Python1381535445

• Gaius-Augustus/GALBA

  GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the scenario where high quality proteins from one or several closely related species are available.

  Language:Perl13710344

• ShujiaHuang/ilus

  A lightweight and handy variant calling pipeline generator for whole-genome sequencing (WGS) and whole exom sequencing data (WES) analysis. 一个简易且全面的 WGS/WES 分析流程生成器.

  Language:Python13051035

• nigyta/dfast_core

  DDBJ Fast Annotation and Submission Tool

  Language:Python7854714

• sagnikbanerjee15/Finder

  A fully automated gene annotator from RNA-Seq expression data

  Language:Python5857614

• bioinformatics-core-shared-training/microarray-analysis

  Materials on the analysis of microarray expression data; focus on re-analysis of public data ( http://tinyurl.com/cruk-microarray)

  Language:HTML559025

• CGGOxford/BrowseVCF

  BrowseVCF is a web-based application and workflow to quickly prioritise disease-causative variants in VCF files.

  Language:Python431278

• genepattern/genepattern-server

  The GenePattern Server web application

  Language:HTML366417

• LottePronk/whokaryote

  Classify metagenomic contigs as eukaryotic or prokaryotic

  Language:Python32187

• qdu-bioinfo/parallel-meta-suite

  Language:C++20169

• ialbert/genescape-central

  Gene Ontology subgraph visualizations

  Language:Python173170

• NAL-i5K/genomics-workspace

  Django website project for common sequence search tools.

  Language:JavaScript176635

• Kan-E/RNAseqChef

  Web app for automated, systematic, and integrated RNA-seq differential expression analysis

  Language:R13142

• jbudis/snakelines

  Computational pipelines for processing of paired-end Illumina reads

  Language:Python105213

• dmiller903/CompoundHetVIP

  A pipeline for the identification of Compound Heterozygous Variants

  Language:Python8252

• biocore/zebra_filter

  Filtering out false taxonomic hits from shotgun sequencing based on genome coverage

  Language:Python7796

• pstawinski/pygenebe

  PyGeneBe: A Python client seamlessly integrating with the GeneBe platform, offering efficient annotation of genetic variants through its API, while supporting pandas, VCF file formats, and HGVS parsing

  Language:Python6330

• HimanshuLab/SCI-VCF

  Language:R5000

• a-xavier/vcf2tab

  Transforms a vcf to a table - Expanding the INFO field

  Language:Rust1100

• OpenOmics/chromoscope

  Interactive multiscale visualization for structural variation in human genomes

  Language:TypeScript100