AllenInstitute/scrattch.hicat

Issues

• Display_cl function

  #80 opened 6 months ago by KatMedMed
  1

• Creating a Reference Data Frame (ref.df) for 10x Genomics Data

  #85 opened a month ago by pnama
  0

• Creating the rd.dat for cl_merge - "too dense for [CR]sparseMatrix; would have more than 2^31-1 nonzero entries"

  #84 opened 2 months ago by JordanWean
  0

• Constellation plots: calculating knn in reduced dimension space - pca or umap?

  #58 opened 4 years ago by carmensandoval
  6

• ERROR: dependency ‘qlcMatrix’ is not available for package ‘scrattch.hicat’

  #82 opened 4 months ago by aarzalluz
  0

• Dependencies need to be updated

  #79 opened 9 months ago by Rushil-Chakra
  1

• Installation error

  #77 opened a year ago by ZhenyaoYe
  3

• How to cite scratch.hicat ?

  #60 opened a year ago by carmensandoval
  1

• Details on the clustering method

  #61 opened a year ago by rmathieu25
  2

• Constellation plots full example

  #78 opened a year ago by salwanbutrus
  0

• Choosing the DE score threshold

  #76 opened 2 years ago by dana-mcc
  0

• tutorial uses old column names

  #75 opened 2 years ago by tmchartrand
  0

• Broad types

  #72 opened 3 years ago by demian1
  0

• install requirements

  #73 opened 3 years ago by tmchartrand
  0

• after iter_clust, cl>49

  #66 opened 3 years ago by yeetingc
  0

• iter_clust keeps failing

  #50 opened 5 years ago by deevdevil88
  0

• Docs: Workflow of functions

  #7 opened 6 years ago by hypercompetent
  0

• Plot River includes source files not included

  #47 opened 5 years ago by bharris12
  1

• Check ref.cl data.frame annotation in compare_annotate

  #45 opened 5 years ago by tebakken
  0

• run_consensus_clust missing return.markers = TRUE setting

  #36 opened 5 years ago by tebakken
  0

• Merge clusters based on number of marker genes regardless of de.score

  #22 opened 5 years ago by tebakken
  1

• iter_clust() and iter_consensus_clust() have an if statement glitch

  #2 opened 5 years ago by hypercompetent
  1

• fast_tsne.R breaks installation of dev branch

  #25 opened 5 years ago by tebakken
  1

• Update column names for tutorial

  #21 opened 6 years ago by apblair
  1

• Split findVG to computation and plots

  #19 opened 6 years ago by hypercompetent
  0

• Multicore clustering should allow user defined .libPath

  #6 opened 6 years ago by tebakken
  1

• Addition of functions for checking whether clusters are outliers or donor-specific

  #8 opened 6 years ago by SarojaSomu
  0

• iter_clust() throws an hclust warning in WGCNA mode

  #3 opened 6 years ago by hypercompetent
  1

• Clustering should be able to run without writing files

  #5 opened 6 years ago by hypercompetent
  0

• Verbosity needs to be adjustable

  #4 opened 6 years ago by hypercompetent
  0

• library() order matters

  #1 opened 6 years ago by hypercompetent
  1