How to use ENSEMBL IDs
lorenzoamir opened this issue · 1 comments
Hi, thanks a lot for the tool! I recently tried using the package but couldn't get it to work with (human) ENSEMBL IDs.
The error I got has already been reported in multiple issues, such as this. In all cases, it seems the problem was people using the package with mouse genes before the species option was implemented. However, I was using human Ensembl IDs and still got the same error.
I tried switching to gene symbols, and everything went smoothly. Perhaps I missed something and need to inform pipelineCNA that I am using Ensembl IDs instead of gene symbols, but I couldn't find an option in the tutorials (which all use gene symbols). If possible I would prefer to stick to Ensembl IDs. Could you provide some pointers on how to run SCEVAN with Ensembl IDs?
I managed to get it to recognize ENSEMBL IDs, it was probably a mistake on my part regarding the format of the data. However I still encountered some issues, so for the time being I'll use gene symbols. I'm closing the issue since I don't have time to provide a detailed description or steps to reproduce at the moment.