[Error] mtx[!Dupl_GeneName, ] : (subscript) logical subscript too long
autumnfe opened this issue · 2 comments
When I ran 'intratumoral heterogeneity' tutorial, I got the error.
I just ran the following code after downloading count-matrix file.
SCEVAN::pipelineCNA(count_mtx, sample = "MGH106", par_cores = 20, SUBCLONES = TRUE, plotTree = TRUE)
But, return this error:
[1] " raw data - genes: 23686 cells: 200"
[1] "1) Filter: cells > 200 genes"
[1] "2) Filter: genes > 10% of cells"
[1] "12304 genes past filtering"
[1] "3) Annotations gene coordinates"
mtx[!Dupl_GeneName, ] : (subscript) logical subscript too long
How to resolve this issue?
I think the preprocessing commit broke something...
this worked for me:
install_github("AntonioDeFalco/SCEVAN@e1c443c48b221b4350a05e3442d9d85867345616")
Sorry, it has now been fixed in the last commit 92761f6