Inconsistence of copy number profile

[wbf520qcp]

Hi
I have run the tool on a group of samples harboring specific chromosome loss. However, the oncoheat and heatmap_subclones show the gain of that chromosome. Any hint on this?
Also, I wonder what is the difference between oncoheat and heatmap_subclones? Sometimes that seem to be inconsistent.
Thanks,

[AntonioDeFalco]

Hi @wbf520qcp,
Check that the normal cells are correctly identified, and if you can, share some pictures of the results here to help us understand the problem.

Thanks Regards.