is there anyway to extract the percentage of sub-clones from the oncoheat data?
mbihie opened this issue · 1 comments
mbihie commented
Hello,
I am trying to create a plot showcasing the inferred copy number of two different samples. I set each dot on this plot as a single sub-clone and I want to display the percentage of each sub-clone from the oncoheat.png plot provided as the size of each dot. I was unable to find the percentage displayed on the legend from the oncoheat plot within the PlotOncoHeat.RData object. I could just copy it from the oncoheat plot given, but I was hoping to be able to pull it from the data at once for multiple samples.
Thank you for the great tool!
mbihie commented
I found it here using this code plotHeatmapOncoHeat[["gtable"]][["grobs"]][[6]][["children"]][["GRID.rect.24"]][["gp"]][["fill"]]