Pinned Repositories
AGAT
Another Gtf/Gff Analysis Toolkit
docker4seq
Running NGS computing demanding applications, e.g reads mapping and counting, wrapped in docker containers.
FALCON-Phase
FALCON-Phase integrates PacBio long-read assemblies with Phase Genomics Hi-C data to create phased, diploid, chromosome-scale scaffolds
how_are_we_stranded_here
Check strandedness of RNA-Seq fastq files
lastz
Program for aligning DNA sequences, a pairwise aligner.
MethylDackel
A (mostly) universal methylation extractor for BS-seq experiments.
NGSTools
Next-Generation Sequencing(NGS) toolkits.
Practicas_BMS_Bioquimica
Prácticas básicas NGS. Análisis mediante FastQC, trimming de lecturas
RASflow
RNA-Seq analysis workflow
RRBS_workflow
AntonioGPS's Repositories
AntonioGPS/docker4seq
Running NGS computing demanding applications, e.g reads mapping and counting, wrapped in docker containers.
AntonioGPS/how_are_we_stranded_here
Check strandedness of RNA-Seq fastq files
AntonioGPS/lastz
Program for aligning DNA sequences, a pairwise aligner.
AntonioGPS/Practicas_BMS_Bioquimica
Prácticas básicas NGS. Análisis mediante FastQC, trimming de lecturas
AntonioGPS/RRBS_workflow
AntonioGPS/AGAT
Another Gtf/Gff Analysis Toolkit
AntonioGPS/BAM-Analysis-Kit
AntonioGPS/BrahmanAngusAssemblyScripts
AntonioGPS/cgmaptools
toolbox for analysing BS-seq data, advance features in SNV, ASM and DMR
AntonioGPS/DGE_workshop_salmon_online
AntonioGPS/DRAGMAP
DRAGEN open-source mapper
AntonioGPS/E-Bike-Edge-MultiField
AntonioGPS/EasyAmplicon
Easy Amplicon data analysis pipeline
AntonioGPS/enigma2_pre_start
AntonioGPS/esp-idf
Espressif IoT Development Framework. Official development framework for Espressif SoCs.
AntonioGPS/fishpond
Differential transcript and gene expression, as well as helper functions for working with Salmon, alevin, and alevin-fry data
AntonioGPS/gffcompare
classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF
AntonioGPS/gffread
GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more
AntonioGPS/gget
🧬 gget enables efficient querying of genomic databases, such as Ensembl, UniProt, NCBI, directly into a Python or terminal programming environment. It was designed to support genomic data analysis.
AntonioGPS/HOME
DMR Identification Tool
AntonioGPS/kallisto
Near-optimal RNA-Seq quantification
AntonioGPS/Kallisto-Alvaro_DESeq2_Pipeline
A script to analyze with DESeq2 data from Kallisto. You maybe are interested only in DESeq2 part and its analisis and representation :)
AntonioGPS/NetSeekR
A networks analysis pipeline for RNASeq time series data
AntonioGPS/ngsplot
Quick mining and visualization of NGS data by integrating genomic databases
AntonioGPS/oneTBB
oneAPI Threading Building Blocks (oneTBB)
AntonioGPS/protune-transforms
GoPro Protune ACES IDTs and YRGB Transforms for DaVinci Resolve
AntonioGPS/RNA_seq_code_TFG
All the scripts for the differents comparations and the general one
AntonioGPS/sarek
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
AntonioGPS/sortmerna
SortMeRNA: next-generation sequence filtering and alignment tool
AntonioGPS/TGS-GapCloser
A gap-closing software tool that uses long reads to enhance genome assembly.