AntonioGPS

AGAT

Another Gtf/Gff Analysis Toolkit

docker4seq

Running NGS computing demanding applications, e.g reads mapping and counting, wrapped in docker containers.

FALCON-Phase

FALCON-Phase integrates PacBio long-read assemblies with Phase Genomics Hi-C data to create phased, diploid, chromosome-scale scaffolds

how_are_we_stranded_here

Check strandedness of RNA-Seq fastq files

lastz

Program for aligning DNA sequences, a pairwise aligner.

MethylDackel

A (mostly) universal methylation extractor for BS-seq experiments.

NGSTools

Next-Generation Sequencing(NGS) toolkits.

Practicas_BMS_Bioquimica

Prácticas básicas NGS. Análisis mediante FastQC, trimming de lecturas

RASflow

RNA-Seq analysis workflow

RRBS_workflow

AntonioGPS/NGSTools

Next-Generation Sequencing(NGS) toolkits.

AntonioGPS/BBMeth

BBMeth: An R package for fitting methylation data with a beta-binomial model

AntonioGPS/bc

Template for Software Carpentry bootcamp site repository.

AntonioGPS/bioawk

BWK awk modified for biological data

AntonioGPS/Bioinformatics-Training

Bioinformatics training resources

AntonioGPS/DataScienceSpecialization.github.io

http://DataScienceSpecialization.github.io

AntonioGPS/edda

Source for course materials at http://ged.msu.edu/angus/

AntonioGPS/estimate_genome_size.pl

Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish

AntonioGPS/go_enrichment

From DNA sequences to GO enrichment Fisher tests

AntonioGPS/jvarkit

Java utilities for Bioinformatics

AntonioGPS/MarlinTarantula

Optimized firmware for RepRap 3D printers based on the Arduino platform. Configured for Tevo Tarantula

AntonioGPS/MCScanx

Multiple Collinearity Scan toolkit. Various downstream displaying and analysis tools for synteny detected using mcscan approach.

AntonioGPS/ngseasy

Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)

AntonioGPS/nozzle

Nozzle is a report generation toolkit for data analysis pipelines implemented in R.

AntonioGPS/poretools

a toolkit for working with Oxford nanopore data

AntonioGPS/pyfaidx

pyfaidx: efficient pythonic random access to fasta subsequences

AntonioGPS/rnaseq_tutorial

Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.

AntonioGPS/samtools_primer

SAMtools: A Primer

AntonioGPS/shinyCircos

an R/shiny application for creation of Circos plot interactively

AntonioGPS/swirl_courses

A collection of interactive courses for the swirl R package.

AntonioGPS/tophat

Spliced read mapper for RNA-Seq