Pinned Repositories
AGAT
Another Gtf/Gff Analysis Toolkit
docker4seq
Running NGS computing demanding applications, e.g reads mapping and counting, wrapped in docker containers.
FALCON-Phase
FALCON-Phase integrates PacBio long-read assemblies with Phase Genomics Hi-C data to create phased, diploid, chromosome-scale scaffolds
how_are_we_stranded_here
Check strandedness of RNA-Seq fastq files
lastz
Program for aligning DNA sequences, a pairwise aligner.
MethylDackel
A (mostly) universal methylation extractor for BS-seq experiments.
NGSTools
Next-Generation Sequencing(NGS) toolkits.
Practicas_BMS_Bioquimica
Prácticas básicas NGS. Análisis mediante FastQC, trimming de lecturas
RASflow
RNA-Seq analysis workflow
RRBS_workflow
AntonioGPS's Repositories
AntonioGPS/FALCON-Phase
FALCON-Phase integrates PacBio long-read assemblies with Phase Genomics Hi-C data to create phased, diploid, chromosome-scale scaffolds
AntonioGPS/MethylDackel
A (mostly) universal methylation extractor for BS-seq experiments.
AntonioGPS/RASflow
RNA-Seq analysis workflow
AntonioGPS/BRB-seqTools
Suite of tools for processing BRB-seq data
AntonioGPS/canu
A single molecule sequence assembler for genomes large and small.
AntonioGPS/cheat
cheat allows you to create and view interactive cheatsheets on the command-line. It was designed to help remind *nix system administrators of options for commands that they use frequently, but not frequently enough to remember.
AntonioGPS/CircAST
CircAST is a computational tool for circular RNA full-length assembly and quantification using RNA-Seq data.
AntonioGPS/Dart
DART – a fast and accurate RNA-seq mapper with a divide-and-conquer strategy
AntonioGPS/eggnog-mapper
Fast genome-wide functional annotation through orthology assignment
AntonioGPS/ena-fast-download
Download FASTQ files of reads from the European Nucleotide Archive (ENA)
AntonioGPS/FALCON
FALCON: experimental PacBio diploid assembler -- Out-of-date -- Please use a binary release: https://github.com/PacificBiosciences/FALCON_unzip/wiki/Binaries
AntonioGPS/FaQCs
Quality Control of Next Generation Sequencing Data
AntonioGPS/fastp
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
AntonioGPS/GradientInfill
AntonioGPS/info
The firmware and documents(resume 3D printings from any printed layer automatically)
AntonioGPS/kentUtils
UCSC command line bioinformatic utilities
AntonioGPS/labs
GoPro Labs
AntonioGPS/LACHESIS
The LACHESIS software, as described in Nature Biotechnology (http://dx.doi.org/10.1038/nbt.2727)
AntonioGPS/mosdepth
fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
AntonioGPS/omicsplayground
Visual analytics platform for multi-omics data.
AntonioGPS/pathfindR
Pathway Enrichment Analysis Utilizing Active Subnetworks
AntonioGPS/PLncPRO
Prediction of lncRNAs using machine learning
AntonioGPS/projects
Small projects not worthy of dedicated repositories
AntonioGPS/PrusaSlicer
G-code generator for 3D printers (RepRap, Makerbot, Ultimaker etc.)
AntonioGPS/salmon
🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using lightweight alignments
AntonioGPS/SALSA
SALSA: A tool to scaffold long read assemblies with Hi-C data
AntonioGPS/scythe
A 3'-end adapter contaminant trimmer
AntonioGPS/STL-thumbnail
Shellextension for Windows File Explorer to show STL thumbnails
AntonioGPS/update_assembly
Generate two phased Juicebox .assembly files from one master .assembly for FALCON-Phase
AntonioGPS/vidger
Make rapid visualizations of RNA-seq data in R