AntonioGPS

AntonioGPS's Stars

• espressif/esp-idf

  Espressif IoT Development Framework. Official development framework for Espressif SoCs.

  Language:C14.1k50012.9k7.4k

• pachterlab/gget

  🧬 gget enables efficient querying of genomic reference databases

  Language:Python958107175

• DerrickWood/kraken2

  The second version of the Kraken taxonomic sequence classification system

  Language:C++74029844275

• torognes/vsearch

  Versatile open-source tool for microbiome analysis

  Language:C++68243544124

• pachterlab/kallisto

  Near-optimal RNA-Seq quantification

  Language:C66548378173

• wdecoster/NanoPlot

  Plotting scripts for long read sequencing data

  Language:Python4431235248

• nf-core/sarek

  Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

  Language:Nextflow413136728417

• Nextomics/NextDenovo

  Fast and accurate de novo assembler for long reads

  Language:C3731521153

• YongxinLiu/EasyAmplicon

  Easy Amplicon data analysis pipeline

  Language:HTML264417104

• pcingola/SnpEff

  Language:Java2582651181

• wyp1125/MCScanX

  MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!

  Language:CAP CDS235157162

• gpertea/gffcompare

  classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF

  Language:C++207149332

• BGI-Qingdao/TGS-GapCloser

  A gap-closing software tool that uses long reads to enhance genome assembly.

  Language:C++18778314

• Illumina/DRAGMAP

  DRAGEN open-source mapper

  Language:C++164195732

• xtremestuff/protune-transforms

  GoPro Protune Flat & LogB ACES IDTs and YRGB Transforms for DaVinci Resolve (Based off HERO5 Black)

  Language:Shell1378218

• signalbash/how_are_we_stranded_here

  Check strandedness of RNA-Seq fastq files

  Language:Python11652025

• biobakery/kneaddata

  Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.

  Language:Python11082029

• hzi-bifo/RiboDetector

  Accurate and rapid RiboRNA sequences Detector based on deep learning

  Language:Python10065416

• lindenb/xslt-sandbox

  My xslt sandbox

  Language:XSLT409118

• frederic-mahe/swarm

  A robust and fast clustering method for amplicon-based studies

  Language:Python31825

• alejandrogzi/gtfsort

  a lexicographically-based GTF/GFF sorter

  Language:Rust28163

• Fabiz/PeakFinder-API

  Demo Page form embedding the PeakFinder API

  Language:HTML283151

• teepean/BAM-Analysis-Kit

  Language:Forth18526

• ialbert/genescape-central

  Gene Ontology subgraph visualizations

  Language:Python173170

• igbb-popescu-lab/NetSeekR

  A networks analysis pipeline for RNASeq time series data

  Language:R14309

• maca88/E-Bike-Edge-MultiField

  Language:Monkey C12554

• tripal/tripal_synview

  synteny viewer

  Language:PHP6423

• AntonioGPS/docker4seq

  Running NGS computing demanding applications, e.g reads mapping and counting, wrapped in docker containers.

  Language:HTML1000

• AntonioGPS/lastz

  Program for aligning DNA sequences, a pairwise aligner.

  Language:C1000

• AntonioGPS/RRBS_workflow

  Language:R1000