Benfeitas

Benfeitas's Stars

• mmistakes/minimal-mistakes

  :triangular_ruler: Jekyll theme for building a personal site, blog, project documentation, or portfolio.

  Language:HTML12.4k1121.3k25.6k

• seandavi/awesome-single-cell

  Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

  3.2k24823983

• 8080labs/ppscore

  Predictive Power Score (PPS) in Python

  Language:Python1.1k2762167

• jeffreytse/jekyll-theme-yat

  🎨 Yet another theme for elegant writers with modern flat style and beautiful night/dark mode.

  Language:HTML9997100914

• sib-swiss/training-collection

  Collection of bioinformatics training materials

  Language:Python9784568183

• deeptools/pyGenomeTracks

  python module to plot beautiful and highly customizable genome browser tracks

  Language:Python76930209111

• gdg-x/zeppelin

  Awesome conference website in 5 minutes.

  Language:HTML6784141933

• erdogant/pca

  pca: A Python Package for Principal Component Analysis.

  Language:Jupyter Notebook29055243

• liulab-dfci/MAESTRO

  Single-cell Transcriptome and Regulome Analysis Pipeline

  Language:C2771210477

• GangCaoLab/CoolBox

  Jupyter notebook based genomic data visualization toolkit.

  Language:Python22758037

• chrisjsewell/ipypublish

  A workflow for creating and editing publication ready scientific reports and presentations, from one or more Jupyter Notebooks, without leaving the browser!

  Language:HTML2241510137

• NBISweden/excelerate-scRNAseq

  Single RNA-seq data analysis with R (Finland, May, 2019)

  Language:HTML216613107

• nf-core/chipseq

  ChIP-seq peak-calling, QC and differential analysis pipeline.

  Language:Nextflow193148187148

• dynverse/dyno

  Inferring, interpreting and visualising trajectories using a streamlined set of packages 🦕

  Language:R170812432

• YaleDHLab/lab-workshops

  Materials for workshops on text mining, machine learning, and data visualization

  Language:Jupyter Notebook144221571

• SysBioChalmers/RAVEN

  The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.

  Language:MATLAB1011313752

• Olink-Proteomics/OlinkRPackage

  Olink R package: A collection of functions to facilitate analysis of proteomic data from Olink. The goal of this package is to help users extract biological insights from proteomic data run on the Olink platform.

  Language:R91126822

• gaurav-kaushik/Data-Visualizations-Medium

  Understanding Data and Machine Learning Models with Visualizations

  Language:Jupyter Notebook386425

• biodatascience/statcomp_src

  Statistical Computing - source Rmarkdown files

  255136

• bjornwallner/ML_medbioinfo

  Machine Learning in Medical Bioinformatics

  Language:Jupyter Notebook215319

• TrainTheTrainer/ELIXIR-EXCELERATE-TtT

  177113

• cssblab/iOmicsPASS

  Data Integration tool utilizing network information for predictive analyses

  Language:C++16604

• culk/ComEvo

  Community evolution on Stack Overflow

  Language:Python10401

• kgdunn/process-improve

  Process Improvement using Data

  Language:Python103247

• statisticalbiotechnology/cb2030

  Course material for CB2030

  Language:Jupyter Notebook1011137

• sysmedicine/phd2020

  PhD Course 2020 Systems Biology of Human Metabolism and Gut Microbiome (3 ECTS)

  Language:Jupyter Notebook8208

• fasterius/dotfiles

  My personal collection of dotfiles.

  Language:Vim Script2102

• neogilab/COVID19

  Commands and codes used for the RNASeq and Proteomics data analysis SARS-Cov2 infected samples

  Language:HTML11

• PECAplus/PECAplus_cmd_line

  Command-Line Interface for PECA+

  Language:C++1234

• susannebauer/familialPrD

  Repository familial PrD manuscript

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