BergmannLab/MONET

Issues

• Error in output[[i]] : subscript out of bounds

  #58 opened a year ago by di-mendes
  1

• Allow running Docker without sudo

  #29 opened 5 years ago by prihoda
  4

• Hard-coded file paths

  #57 opened 2 years ago by FelixTheStudent
  0

• MONET.K1

  #56 opened 2 years ago by hadicharati
  0

• Single nodes in the cluster

  #55 opened 3 years ago by Jordi-V
  4

• maximum number of genes in cluster for K1

  #54 opened 3 years ago by jpinero
  3

• Positive and negative weights

  #53 opened 3 years ago by JoseAML
  5

• R1 clustering in MONET dosent work

  #51 opened 3 years ago by Jordi-Valls
  5

• Docker on Mac OS X: no "successfully built" line

  #49 opened 3 years ago by jjc2718
  4

• Error in K1: change of pip's URL

  #46 opened 4 years ago by ewysocka
  1

• Error: building k1-image

  #47 opened 3 years ago by ngerstner
  2

• ERROR: docker build returned an error

  #44 opened 4 years ago by ewysocka
  3

• Error: docker not installed

  #45 opened 4 years ago by nebfield
  3

• ERROR with docker version: 20.10.1 on Ubuntu 20.04 LTS

  #43 opened 4 years ago by ewysocka
  2

• Error: file 'input.txt' not found

  #42 opened 4 years ago by abrantesas
  2

• K1 - disconnected nodes in a cluster

  #41 opened 4 years ago by ewysocka
  5

• Docker build returned an error

  #40 opened 4 years ago by XscapeCn
  1

• What does the --largest mean?

  #39 opened 4 years ago by hui-liu
  1

• M1 method not using --smallest parameter

  #38 opened 4 years ago by clescoat
  1

• manual install

  #36 opened 5 years ago by gianfilippo
  3

• Cytoscape Input

  #35 opened 5 years ago by zebasilio
  4

• R1 method using default parameters fail with error 'problem too large'

  #15 opened 5 years ago by cristian931
  10

• set numerical separator in result-modules output file to 1.0

  #32 opened 5 years ago by mattiat
  9

• R1 error on small input: subscript out of bounds

  #20 opened 5 years ago by mattiat
  7

• K1 can fail without returning an error

  #14 opened 5 years ago by mattiat
  1

• add a spinner when user is waiting

  #22 opened 5 years ago by mattiat
  1

• multiple MONET instances in parallel

  #4 opened 5 years ago by mattiat
  3

• uninstaller should remove docker/singularity images

  #8 opened 5 years ago by mattiat
  2

• Ctrl-C does not stop monet

  #9 opened 5 years ago by mattiat
  5

• hide containers/src folers and monet executable

  #26 opened 5 years ago by mattiat
  1

• improve the README file

  #18 opened 5 years ago by mattiat
  1

• improve error message when R1 fails because of lack of RAM resources

  #25 opened 5 years ago by mattiat
  0

• How to modify the target module number for K1？

  #21 opened 5 years ago by FenghuJi
  2

• K1 error on small input: n_samples should be >= n_clusters

  #19 opened 5 years ago by mattiat
  0

• reinstaller hangs

  #23 opened 5 years ago by mattiat
  1

• R1 parameters: improve help and documentation.

  #17 opened 5 years ago by mattiat
  1

• M1 implictly assumes networks with > 100 nodes

  #16 opened 5 years ago by sergio-gomez
  2

• gene-level module membership score

  #11 opened 5 years ago by mattiat
  4

• prevent execution of MONET's main script directly (i.e. without installation)

  #12 opened 5 years ago by mattiat
  1

• --output bug

  #7 opened 5 years ago by mattiat
  5

• R1 method (Causality team): input format consisting of strings as genes identifiers

  #5 opened 5 years ago by mattiat
  1

• input format: numeric identifiers for genes

  #3 opened 5 years ago by mattiat
  0

• installer no root

  #2 opened 5 years ago by mattiat
  2

• Ubuntu 17.10 docker: Release not found

  #1 opened 5 years ago by mattiat
  0