Caizhaohui

Caizhaohui's Stars

• rustdesk/rustdesk

  An open-source remote desktop application designed for self-hosting, as an alternative to TeamViewer.

  Language:Rust79.2k4883.3k11.1k

• binary-husky/gpt_academic

  为GPT/GLM等LLM大语言模型提供实用化交互接口，特别优化论文阅读/润色/写作体验，模块化设计，支持自定义快捷按钮&函数插件，支持Python和C++等项目剖析&自译解功能，PDF/LaTex论文翻译&总结功能，支持并行问询多种LLM模型，支持chatglm3等本地模型。接入通义千问, deepseekcoder, 讯飞星火, 文心一言, llama2, rwkv, claude2, moss等。

  Language:Python66.8k2821.7k8.2k

• ossu/bioinformatics

  :microscope: Path to a free self-taught education in Bioinformatics!

  5.7k37024957

• aqlaboratory/openfold

  Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2

  Language:Python2.9k50362554

• yangkky/Machine-learning-for-proteins

  Listing of papers about machine learning for proteins.

  1.6k150182207

• Peldom/papers_for_protein_design_using_DL

  List of papers about Proteins Design using Deep Learning

  1.5k1181182

• evo-design/evo

  Biological foundation modeling from molecular to genome scale

  Language:Jupyter Notebook1.2k2361151

• steineggerlab/foldseek

  Foldseek enables fast and sensitive comparisons of large structure sets.

  Language:C86218355104

• SupeRuier/awesome-active-learning

  Everything you need about Active Learning (AL).

  83812277

• chapmanb/bcbb

  Incubator for useful bioinformatics code, primarily in Python and R

  Language:Python6125879242

• NBISweden/AGAT

  Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/

  Language:Perl4764534458

• mxmlnkn/rapidgzip

  Gzip Decompression and Random Access for Modern Multi-Core Machines

  Language:C++3857447

• KosinskiLab/AlphaPulldown

  Language:Python236828248

• FreshAirTonight/af2complex

  Predicting direct protein-protein interactions with AlphaFold deep learning neural network models.

  Language:Python15472619

• flatironinstitute/deepblast

  Neural Networks for Protein Sequence Alignment

  Language:Python11768621

• gbouras13/hybracter

  Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.

  Language:Python1122468

• gbouras13/phold

  Phage Annotation using Protein Structures

  Language:Python894354

• idmjky/EvolvePro

  PLM based active learning model for protein engineering

  Language:Python702912

• pwwang/vcfstats

  Powerful statistics for VCF files

  Language:Python6762915

• voorloopnul/awesome-phages

  A curated list of phage related software and computational resources for phage scientists, bioinformaticians and enthusiasts.

  47705

• cultivarium/MicrobeMod

  A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing

  Language:Python434241

• google-deepmind/nuclease_design

  ML-guided enzyme engineering

  Language:Jupyter Notebook418112

• HySonLab/Directed_Evolution

  Protein Design by Machine Learning guided Directed Evolution

  Language:Python28222

• jsunn-y/ALDE

  Active Learning-Assisted Directed Evolution for Protein Engineering

  Language:Jupyter Notebook28123

• ulelab/ultraplex

  Ultra-fast 5' and 3' demultiplexer

  Language:Python2533512

• nebiolabs/domainator

  A flexible and modular software suite for domain-based gene neighborhood and protein search, extraction, and clustering.

  Language:Python163141

• Binomica-Labs/ProtoFlow

  A simple molecular biology protocol generator based on a step-pool system. Outputs a PDF of the desired workflow with timings and pictures.

  Language:Lua13400

• erinhwilson/promoter-id-from-rnaseq

  Computational framework to identify promoter sequences from RNA-seq datasets

  Language:Python10221

• Maize-Genetics-and-Genomics-Database/FASSO

  FASSO: Functional Annotations using Sequence and Structure Orthology

  Language:PHP9422

• deprekate/prfect

  Software to predict the occurence of programmed ribosomal frameshifting in bacterial, phage, and viral genomes

  Language:Python7371