Cristianetaniguti

Cristianetaniguti's Stars

• schollz/croc

  Easily and securely send things from one computer to another :crocodile: :package:

  Language:Go29.7k2525251.2k

• broadinstitute/gatk

  Official code repository for GATK versions 4 and up

  Language:Java1.8k1544.6k603

• openjournals/joss

  The Journal of Open Source Software

  Language:Ruby1.6k88875188

• pencil2d/pencil

  Pencil2D is an easy, intuitive tool to make 2D hand-drawn animations. Pencil2D is open source and cross-platform.

  Language:C++1.5k711k280

• broadinstitute/cromwell

  Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

  Language:Scala1k1132.9k361

• ThinkR-open/golem

  A Framework for Building Robust Shiny Apps

  Language:R92222643131

• openwdl/wdl

  Specification for the Workflow Description Language (WDL).

  80787313309

• igvteam/igv

  Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations

  Language:Java668451.3k390

• knausb/vcfR

  Tools to work with variant call format files

  Language:R2571619453

• OpenDroneMap/FIELDimageR

  FIELDimageR: A R package to analyze orthomosaic images from agricultural field trials. This package is a compilation of functions to analyze pos-mosaicking images from research fields, and allows to: crop the image; remove soil effect; build vegetation indices; rotate the image; build the plot shapefile; extract information for each plot; and evaluate stand count, canopy percentage, and plant height.

  Language:R251404292

• broadinstitute/warp

  WDL Analysis Research Pipelines

  Language:WDL2112374102

• ENCODE-DCC/caper

  Cromwell/WDL wrapper for Python

  Language:Python55109018

• dcgerard/updog

  Flexible Genotyping of Polyploids using Next Generation Sequencing Data

  Language:R284278

• lvclark/polyRAD

  Genotype Calling with Uncertainty from Sequencing Data in Polyploids 🍌🍓🥔🍠🥝

  Language:HTML285169

• mmollina/MAPpoly

  Genetic maps in autopolyploids

  Language:R286269

• lmtani/pumbaa

  Command-line interface for Cromwell server

  Language:Go18213

• OBF/newsletter

  repo for OBF community newsletter updates

  1811199

• PlantandFoodResearch/MCHap

  Polyploid micro-haplotype assembly using Markov chain Monte Carlo simulation.

  Language:Python1851233

• rramadeu/AGHmatrix

  An R package to compute relationship matrices for diploid and autopolyploid species

  Language:R11303

• guilherme-pereira/QTLpoly

  R package for random-effect multiple QTL mapping in autopolyploids

  Language:R9346

• PlantandFoodResearch/hidecan

  Package to create hidecan plots for GWAS and differential expression results

  Language:R71001

• bschiffthaler/BatchMap

  Fork of OneMap for fast computation of high density linkage maps

  Language:R3223

• curso-r/201909-intro-r-esalq

  Language:HTML3705

• rramadeu/Tutorials_File

  It hosts complementary files from tutorials and posts of statgen.esalq.usp.br webpage

  Language:HTML3105

• jeekinlau/seed_counter_pipeline_opencv

  pipeline for counting seeds

  Language:Python2100

• oliviaAB/hidecan

  Package to create hidecan plots for GWAS and differential expression results

  Language:R2000