Daniel-Liu-c0deb0t/block-aligner

Issues

• thread 'main' panicked: "Traceback cigar end position must be in bounds!"

  #34 opened a month ago by d-cameron
  0

• Wrong alignment for tiny sequences when FREE_QUERY_END_GAPS=true

  #33 opened 2 months ago by d-cameron
  0

• Support Alignment of DNA sequences with C API

  #3 opened 3 years ago by adcosta17
  2

• Advice on setting for short query in long reference search

  #30 opened 4 months ago by rickbeeloo
  5

• [BUG] Incorrect index calculation for score matrix setter

  #31 opened 4 months ago by rickbeeloo
  7

• semi-global alignment

  #28 opened 6 months ago by jianshu93
  6

• Try out convergence of traceback pointers

  #29 opened 6 months ago by Daniel-Liu-c0deb0t
  0

• Question: Syntax for modifying the nucleotide scoring matrix

  #27 opened 9 months ago by nrminor
  3

• `cargo.toml` in `c` directory is detected as duplicate package

  #24 opened 2 years ago by RagnarGrootKoerkamp
  1

• fuzzy text finding

  #21 opened 2 years ago by Ephilipz
  7

• question on block aligner score and lowest identity allowed to be accurate

  #18 opened 2 years ago by jianshu93
  6

• Realignment

  #19 opened 2 years ago by Daniel-Liu-c0deb0t
  0

• Thoughts on relation to / comparison with WFA

  #13 opened 3 years ago by rob-p
  1

• Neon and related

  #4 opened 2 years ago by jianshu93
  4

• Use staticlib

  #14 opened 2 years ago by Daniel-Liu-c0deb0t
  0

• Investigate performance regressions

  #15 opened 2 years ago by Daniel-Liu-c0deb0t
  0

• Custom AAMatrix from C API?

  #10 opened 3 years ago by smarco
  7

• `rand_mutate` cannot generate consecutive insertions

  #9 opened 3 years ago by RagnarGrootKoerkamp
  4

• Is there a reason gap_open has to be > gap_extend and not >= gap_extend?

  #7 opened 3 years ago by tfenne
  3

• Option to reuse memory when block aligner is reallocated

  #2 opened 3 years ago by Daniel-Liu-c0deb0t
  0

• Is using -0.5 as extend penalty supported?

  #5 opened 3 years ago by trevorpfiz
  2

• Support alignment of protein sequences containing "*"

  #1 opened 3 years ago by matchy233
  1