Pinned Repositories
bioconda-recipes
Conda recipes for the bioconda channel.
calitas
This repository is home to CALITAS, a CRISPR-Cas-aware ALigner for In silico off-TArget Search. CALITAS implements a customized gapped alignment of guide sequences to genomes and other reference sequences, returning consistent and non-redundant alignments.
digenomitas
Digenome software
gatk
Official code repository for GATK versions 4 and up
GKL
Accelerated kernel library for genomics
kraken
Kraken taxonomic sequence classification system
pipebuffer
A command line program for large scale buffering between piped programs
tfenne's Repositories
tfenne/pipebuffer
A command line program for large scale buffering between piped programs
tfenne/bioconda-recipes
Conda recipes for the bioconda channel.
tfenne/calitas
This repository is home to CALITAS, a CRISPR-Cas-aware ALigner for In silico off-TArget Search. CALITAS implements a customized gapped alignment of guide sequences to genomes and other reference sequences, returning consistent and non-redundant alignments.
tfenne/digenomitas
Digenome software
tfenne/gatk
Official code repository for GATK versions 4 and up
tfenne/GKL
Accelerated kernel library for genomics
tfenne/kraken
Kraken taxonomic sequence classification system
tfenne/Kraken_db_install_scripts
Updated Kraken DB install scripts to cope with new-ish NCBI structure
tfenne/picard
A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.
tfenne/r-rcpp-feedstock
A conda-smithy repository for r-rcpp.
tfenne/scala-collection-compat
Scala 2.13 Collection Compatibility Library
tfenne/staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
tfenne/tabulate
Simple command line utility to generate fixed-width tables from tab-separated inputs
tfenne/tools-iuc
Tool Shed repositories maintained by the Intergalactic Utilities Commission
tfenne/VarDict
VarDict
tfenne/VarDictJava
VarDict Java port