tfenne

tfenne's Stars

• broadinstitute/picard

  A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

  Language:Java991157808371

• fulcrumgenomics/fgbio

  Tools for working with genomic and high throughput sequencing data.

  Language:Scala3171941569

• broadinstitute/CellBender

  CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.

  Language:Python3051032858

• samtools/htsjdk

  A Java API for high-throughput sequencing data (HTS) formats.

  Language:Java28550597244

• ViennaRNA/forna

  Create force-directed graphs of RNA secondary structures.

  Language:JavaScript10084731

• genome-in-a-bottle/giab_latest_release

  This repository contains information about latest release from Genome in a Bottle project

  7313185

• fulcrumgenomics/dagr

  A scala based DSL and framework for writing and executing bioinformatics pipelines as Directed Acyclic GRaphs

  Language:Scala69129914

• human-pangenomics/hpgp-data

  Data from the Human PanGenomics Project

  6010124

• fulcrumgenomics/fqtk

  Fast FASTQ sample demultiplexing in Rust.

  Language:Rust5811131

• fulcrumgenomics/guide-counter

  A better, faster way to count guides in CRISPR screens.

  Language:Rust312103

• lindenb/jbwa

  Java Bindings (JNI) for bwa

  Language:Java199412

• fulcrumgenomics/sopt

  An argument parsing library for Scala

  Language:Scala10971

• fulcrumgenomics/commons

  Common scala utilities

  Language:Scala49153

• sstadick/timfmt

  A small utility for formatting things the way Tim prefers.

  Language:Rust430