Danko-Lab/TED

Issues

• Issue running run.Ted()

  #30 opened 9 months ago by hannahsfuchs
  0

• Clarification in input samples

  #19 opened 2 years ago by DustinSokolowski
  3

• Suggestions on building own single cell reference

  #29 opened 2 years ago by Tianqi-Ma
  3

• Generally high tumor proportion from TCGA data

  #28 opened 2 years ago by SBaek613
  1

• checkForRemoteErrors(val) : one node produced an error: could not find function "rmultinom"

  #22 opened 2 years ago by kanefos
  10

• error: undefined columns selected

  #27 opened 2 years ago by Chao-Guo-hub
  0

• A question about the dangerous cell types

  #25 opened 2 years ago by XUEbaogai0101
  9

• scRNA reference matrix issues

  #26 opened 2 years ago by SBaek613
  1

• Issues with snowfall - parallel execution

  #23 opened 2 years ago by albertop210
  2

• Could I use this method to infer cell type from samples which are not tumor samples, likes untreated and treated samples?

  #24 opened 2 years ago by Jihong528
  3

• Error running TED: Error: $ operator is invalid for atomic vectors

  #16 opened 2 years ago by zroger49
  6

• Running Error using "run.Ted"

  #20 opened 2 years ago by longmin0706
  2

• The results of dREG Portal

  #21 opened 2 years ago by yunbokai
  1

• 1 current sample ID:1 Error in FUN(X[[i]], ...) : argument "seed" is missing, with no default

  #18 opened 2 years ago by vincent1715
  2

• Seed argument for publication reproduciblity

  #17 opened 2 years ago by t-carroll
  2

• vst transformation is feasible, but failed executing the next command

  #15 opened 2 years ago by emkahuda
  17

• could not find function, 'norm.to.one'

  #14 opened 2 years ago by Ci-TJ
  1

• Error in rmultinom

  #13 opened 3 years ago by xzhouaw
  5

• small suggestions

  #5 opened 4 years ago by kvittingseerup
  5

• Clarification of tumor subtype strategy

  #11 opened 3 years ago by t-carroll
  2

• run TED on non-tumor data

  #10 opened 3 years ago by RK1912
  8

• does normalized data input work well?

  #9 opened 3 years ago by yingyonghui
  1

• Error during correct batch effect

  #6 opened 4 years ago by t-carroll
  6

• Relaxation of assumption of identical stroma expression profiles

  #3 opened 4 years ago by kvittingseerup
  5

• Also output tumor expression profile

  #4 opened 4 years ago by kvittingseerup
  2

• Uncertainty of estimated proportions

  #2 opened 4 years ago by kvittingseerup
  3

• Help with expected input

  #1 opened 4 years ago by kvittingseerup
  6