Pinned Repositories
ami
AMI Medical Imaging (AMI) JS ToolKit
ChRIS_store
Backend for ChRIS plugin apps store
ChRIS_store_ui
UI for the ChRIS Store
ChRIS_ui
UI for ChRIS
ChRIS_ultron_backEnd
Backend for ChRIS
matlab
Matlab Projects and Snippets
med2image
Converts medical images to more displayable formats, e.g. NIfTI to jpg.
pman
A process management system written in python
pypx
Python wrapper to interact with a PACS (based off DCMTK and PyDicom)
ubuntu-python3
Source for a slim Ubuntu-based Python3 image
FNNDSC / BCH's Repositories
FNNDSC/cookiecutter-chrisapp
A cookiecutter template for Chris app plugins
FNNDSC/charts
ChRIS backend on Kubernetes
FNNDSC/pl-fastsurfer_inference
An app to efficiently perform cortical parcellation and segmentation on raw brain MRI images
FNNDSC/pl-image_textRemove
A chris plugin to identify and remove text from images
FNNDSC/mbox2m365
A small helper module to facilitate use of m365 to send email via an authenticated Outlook/Office365 backend
FNNDSC/pl-images-register
FNNDSC/hasura-cli
Container image for hasura-cli
FNNDSC/openapi-clients
OpenAPI generated client libraries for the ChRIS backend
FNNDSC/pflink
A FastAPI application to interact with CUBE and pfdcm
FNNDSC/pl-cookie_taste
A test cookiecutter app
FNNDSC/pl-dcm2mha_cnvtr
A ChRIS plugin to convert dcm files to mha and vice-versa
FNNDSC/pl-dcm2niix
DICOM to NIFTI conversion
FNNDSC/pl-dicom_filter
A ChRIS plugin to filter dicom files by applying filters on dicom headers
FNNDSC/pl-dicom_headerEdit
A DS plugin around pfdicom_tagSub that allows for editing DICOM headers. Most often used to anonymize DICOMs
FNNDSC/pl-dicom_info
Generate various file reports (txt, csv, html) containing information on DICOM tags in an upstream parent.
FNNDSC/pl-dicom_repack
A ChRIS plugin to repack individual slices to a single volume
FNNDSC/pl-dicom_unpack
A ChRIS plugin to unpack dicom volumes into individual slices
FNNDSC/pl-dircopy
A Chris 'fs' plugin app to copy file/folders from a directory into a Chris' feed.
FNNDSC/pl-gpu_test
An app to check if a system has GPU(s) available
FNNDSC/pl-lld_inference
A ChRIS plugin that runs an inference model to predict landmark points on leg images
FNNDSC/pl-multipass
A ChRIS plugin app that can make multiple passes or runs of a certain Python Utility with different args.
FNNDSC/pl-orthanc_push
An app to push/upload dicoms to an orthanc server
FNNDSC/pl-pfdicom_tagExtract
ChRIS DS plugin for the pfdicom_tagExtract utility
FNNDSC/pl-pfdicom_tagSub
Edit the values of a collection of user specified DICOM tags
FNNDSC/pl-pfdo_med2img
A ChRIS plugin that can recursively walk down a directory tree and perform a 'med2image' on files in each directory (optionally filtered by some simple expression). Results of each operation are saved in output tree that preserves the input directory structure.
FNNDSC/pl-pfdorun
A ChRIS DS plugin that can perform somewhat arbitrary (housekeeping) operations on patterns of input directories and files.
FNNDSC/pl-shexec
A ChRIS DS plugin that uses `pfdo_run` to provide shell-like command functionality
FNNDSC/pl-simpledsapp
Chris plugin app simpledsapp
FNNDSC/pl-topologicalcopy
A simple ChRIS 'ts' app to copy filtered output directories from a list of input plugin instances
FNNDSC/plugin2cube
A simple app that "registers" a plugin to a CUBE instance directly from the CLI