Pinned Repositories
ami
AMI Medical Imaging (AMI) JS ToolKit
ChRIS_store
Backend for ChRIS plugin apps store
ChRIS_store_ui
UI for the ChRIS Store
ChRIS_ui
UI for ChRIS
ChRIS_ultron_backEnd
Backend for ChRIS
matlab
Matlab Projects and Snippets
med2image
Converts medical images to more displayable formats, e.g. NIfTI to jpg.
pman
A process management system written in python
pypx
Python wrapper to interact with a PACS (based off DCMTK and PyDicom)
ubuntu-python3
Source for a slim Ubuntu-based Python3 image
FNNDSC / BCH's Repositories
FNNDSC/pman
A process management system written in python
FNNDSC/pl-fshack
A quick "hack" plugin for freesurfer
FNNDSC/python-chrisapp-template
Batteries-included template for Python ChRIS plugins.
FNNDSC/Fetal_Brain_MRI_Reconstruction_Pipeline
Fetal brain reconstruction pipeline
FNNDSC/miniChRIS-podman
Run ChRIS using Podman or Kubernetes
FNNDSC/pl-image_textRemove
A chris plugin to identify and remove text from images
FNNDSC/pypx-listener
A DICOM instance handler for storescp which reorganizes incoming DICOM files for the pypx+pfdcm+ChRIS ecosystem.
FNNDSC/chart-testers
Images used in our Helm chart tests
FNNDSC/correct_MALP-EM_map
MALP-EM post-processing
FNNDSC/DeepN4
FNNDSC/edge-image-automation
FNNDSC/LLDanalysis_ui
FNNDSC/nvim-configs
Some opinionated nvim configuration files (mostly lua)
FNNDSC/openconnect-bch
A CLI client for Boston Children Hospital's "Pulse Secure" VPN
FNNDSC/pl-dcm2mha_cnvtr
A ChRIS plugin to convert dcm files to mha and vice-versa
FNNDSC/pl-dicom_filter
A ChRIS plugin to filter dicom files by applying filters on dicom headers
FNNDSC/pl-dicom_headerEdit
A DS plugin around pfdicom_tagSub that allows for editing DICOM headers. Most often used to anonymize DICOMs
FNNDSC/pl-dyworkflow
Separate a parent node into multiple siblings and add the same workflow to each child.
FNNDSC/pl-gpu_test
An app to check if a system has GPU(s) available
FNNDSC/pl-lld_inference
A ChRIS plugin that runs an inference model to predict landmark points on leg images
FNNDSC/pl-notification
FNNDSC/pl-pdf2img
A ChRIS DS plugin that converts input PDFs to images (jpg or png)
FNNDSC/pl-spleendata
A ChRIS FS plugin that downloads spleen data for segmentation
FNNDSC/pl-spleendatads
A ChRIS DS data pulling plugin for spleen NIfTI data.
FNNDSC/pl-TrainSeg
FNNDSC/pl-visual-dataset
Mark a ChRIS plugin instance as a public dataset.
FNNDSC/pypx-rs
DICOMweb implementation for pypx-organized DICOM files
FNNDSC/ROBEX-container
A container for ROBEX
FNNDSC/runj
FNNDSC/test_chris_AG
testing the python stuff