Huanle

Huanle's Stars

• moshi4/pyCirclize

  Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)

  Language:Python789104550

• salesforce/progen

  Official release of the ProGen models

  Language:Python6272043117

• HeliXonProtein/OmegaFold

  OmegaFold Release Code

  Language:Python558136079

• soedinglab/hh-suite

  Remote protein homology detection suite.

  Language:C55225325136

• mrabarnett/mrab-regex

  Language:C465853250

• igvteam/igv-reports

  Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.

  Language:Python352157554

• ncbi/pgap

  NCBI Prokaryotic Genome Annotation Pipeline

  Language:Common Workflow Language3223031690

• tctianchi/pyvenn

  2 ~ 6 sets venn diagram for python

  Language:Python322821119

• erdogant/findpeaks

  The detection of peaks and valleys in a 1d-vector or 2d-array (image)

  Language:Python23982729

• mmagnus/rna-tools

  🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs @ http://rna-tools.rtfd.io web @ http://rna-tools.online

  Language:Jupyter Notebook1531011942

• saketkc/gencode_regions

  Extract 3'UTR, 5'UTR, CDS, Promoter, Genes, Introns, Exons from GTF files

  Language:Jupyter Notebook1036853

• fbreitwieser/bamcov

  :boom: Quickly calculate and visualize sequence coverage in alignment files

  Language:C99569

• Russel88/CRISPRCasTyper

  CCTyper: Automatic detection and subtyping of CRISPR-Cas operons

  Language:Python9635518

• aryeelab/guideseq

  Analysis pipeline for the GUIDE-seq assay.

  Language:Python76166055

• Eikor/InstructPLM

  The first large protein language model trained follows structure instructions.

  Language:Python72245

• gem-pasteur/macsyfinder

  MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.

  Language:Python52107217

• manzt/pygv

  a minimal, scriptable genome browser for python

  Language:Python48361

• steineggerlab/petasearch

  🧬 Efficient parallelized peta-scale protein database search

  Language:C423140

• CRISPRlab/CRISPRdisco

  CRISPR discovery pipeline

  Language:Jupyter Notebook329816

• YaCui/NG-Circos

  Language:JavaScript302110

• haotianteng/Xron

  Xron - an omni basecaller for ONT reads.

  Language:Python20443

• maovshao/PLMAlign

  PLMAlign utilizes per-residue embeddings as input to obtain specific alignments and more refined similarity

  Language:Jupyter Notebook20123

• pinellolab/CRISPRme

  Language:Python186468

• stat-lab/MOPline

  Detection and genotyping of structural variants

  Language:Perl182125

• crisprVerse/crisprScore

  On-Target and Off-Target Scoring Algorithms for CRISPR gRNAs

  Language:Python152203

• pritykinlab/guidescan-cli

  a guideRNA database generation tool

  Language:C++133165

• RacconC/gtftools

  Language:Python13144

• BackofenLab/CRISPRtracrRNA

  Language:C7693

• malabz/stmsa-cpp

  do multiple nucleotide sequence alignment fast and accurately

  Language:C++3101

• ThallingerLab/StructuralGenomeVariations

  Comparison of tools for the identification of structural variations in microbial genomes

  Language:Python2101