HumanCellAtlas/skylab
Soon to be deprecated in favor of broadinstitute/warp github repo. Previously: Secondary analysis pipelines
WDLBSD-3-Clause
Issues
- 0
version 2.0.0 on terra underestimation in several cells
#360 opened by YOU-k - 4
Streamlining the implementation, updating, and (re-)running of pipelines in multiple centers
#279 opened by LisaSikkema - 10
Why not leverage biocontainers?
#145 opened by brainstorm - 1
reduce memory requirement
#298 opened by YOU-k - 1
- 1
- 4
Harmonize organism reference creation
#207 opened by ambrosejcarr - 1
GENCODE data has moved to ebb
#156 opened by canergen - 2
max_retries v maxRetries
#225 opened by mlin - 1
- 2
emptyDropsWrapper.R bug
#302 opened by edenisen - 2
auto-generate dependencies.json for test workflows
#203 opened by mlin - 2
Illegal instruction in create_zar_ss2.py
#193 opened by detrout - 1
Most of the links in the SS2 wiki are broken
#161 opened by mckinsel - 1
Typo in RunBenchmarkingAnalysis.wdl?
#122 opened by jlchang - 1
Picard Post Alignment QC / GTF to Ribosomal Interval List: value of $chrom_sizes?
#106 opened by lijiang825 - 0
- 5
Where are the docker containers?
#222 opened by olgabot - 2
Remediate High urllib3 vulnerability
#257 opened by Lilalamar - 2
Remediate High Jinja2 vulnerability
#256 opened by Lilalamar - 2
--tags in SplitBamByCellBarcode.wdl
#227 opened by MikeHala - 3
- 2
Markdown link from README is broken
#131 opened by vsoch - 1
Examine Optimus STAR parameters
#108 opened by ambrosejcarr - 5
- 14
Scale problems with 10x count.wdl
#26 opened by ambrosejcarr - 0
.DS_Store
#23 opened by ambrosejcarr