Intel-HLS/GenomicsDB

Issues

• Trouble installing in Ubuntu

  #228 opened 5 years ago by anthonypalacios
  1

• CSV Data Import in GenomicsDB

  #227 opened 6 years ago by drsamibioinfo
  0

• Trouble Installing

  #226 opened 6 years ago by RoydenClark
  5

• Correct combination operation for length "A" fields?

  #136 opened 6 years ago by jackgoldsmith4
  5

• Can not recognize the vcf/gvcf

  #195 opened 6 years ago by aardes
  3

• Error while writing to TileDB array

  #225 opened 6 years ago by phuchoang1012
  2

• BookKeeping error while using GATK4 GenomicsDBImport

  #222 opened 6 years ago by TimurIs
  4

• Core Dumped

  #211 opened 6 years ago by rtemanni
  2

• Query based on other column

  #213 opened 6 years ago by aardes
  2

• tmp vcf header getting unlinked very early for Cloud URLs

  #207 opened 6 years ago by nalinigans
  3

• Problematic frame tiledb_array_iterator_reset_subarray from JNI

  #197 opened 6 years ago by jacmarjorie
  6

• [Question] MPI query

  #201 opened 6 years ago by sherzinger
  4

• Cmake error: cannot find MPI on macOS

  #187 opened 6 years ago by nuin
  9

• Add reference to Dockerfile to wiki?

  #9 opened 6 years ago by pearofducks
  2

• Another segfault when importing VCF

  #133 opened 6 years ago by chenxiang1028
  4

• Called GTs are poorly formatted and sometimes inaccurate

  #161 opened 6 years ago by ldgauthier
  7

• error: ‘const class google::protobuf::RepeatedPtrField<SampleIDToTileDBIDMap>’ has no member named ‘cbegin’

  #199 opened 6 years ago by bamyasi
  4

• [src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/vid_mapper_sql.cc.o] Error 1

  #196 opened 6 years ago by haiwufan
  5

• No Sample Line

  #148 opened 6 years ago by aardes
  8

• Querying across multiple arrays

  #186 opened 6 years ago by simonwhite71
  0

• Multiple random genotypes generated if GT is last field in vid_mapping.json fields section for GenomicsDB 0.9.0 vcf2tiledb

  #171 opened 7 years ago by wrighth-omics
  5

• build difficulties, docker error

  #167 opened 7 years ago by jpdna
  1

• question on updates regarding spanning deletions

  #118 opened 7 years ago by sooheelee
  5

• Segfault when working with VCF with multiple contigs

  #142 opened 7 years ago by jackgoldsmith4
  3

• Segfault when importing VCF

  #123 opened 7 years ago by jackgoldsmith4
  5

• Bad floating point parsing in AF field

  #128 opened 7 years ago by jackgoldsmith4
  8

• Default combination operation for DP INFO field produces different value

  #138 opened 7 years ago by jackgoldsmith4
  1

• reference genome file in query.json

  #137 opened 7 years ago by jackgoldsmith4
  2

• Two extra zeroes added onto DP INFO field

  #129 opened 7 years ago by jackgoldsmith4
  6

• Help with a Simple Query

  #135 opened 7 years ago by danking
  4

• Cannot find GenomicsDB maven package that supports spark-core_2.11

  #130 opened 7 years ago by jackgoldsmith4
  2

• unable to build new cpp gtests

  #124 opened 7 years ago by mcwrinn
  2

• No valid combination operation found for INFO field QS

  #122 opened 7 years ago by WordLess-ChuanJun
  6

• Remove or supress "Buffer resized" message

  #113 opened 7 years ago by lbergelson
  6

• Fields information field_info type of "flag"

  #82 opened 8 years ago by CanWood
  2

• test failed: GenomicsDB/tests/run.py not working for test examples

  #83 opened 8 years ago by rakesh4osdd
  1

• vcf2tiledb mpirun fails

  #64 opened 8 years ago by mgujral
  2

• Secondary indexes

  #72 opened 8 years ago by dna0ff
  3

• Option to skip 0/0 GT

  #27 opened 8 years ago by dd232580
  3

• Error: Cannot load array schema when creating a new array

  #48 opened 8 years ago by lbergelson
  1

• vcf2tiledb: src/loader/load_operators.cc:303: virtual void LoaderCombinedGVCFOperator::operate(const void*): Assertion `end_value >= m_partition.first && column_value <= m_partition.second' failed.

  #20 opened 8 years ago by rtemanni
  2

• Similarity search

  #65 opened 8 years ago by VJalili
  9

• Error reporting

  #61 opened 8 years ago by kgururaj
  1

• Test

  #60 opened 8 years ago by kgururaj
  0

• Floating point exception (core dumped)

  #51 opened 8 years ago by Shenglai
  7

• Error reporting - report "holes" in row_idx sequence in callsets JSON

  #49 opened 8 years ago by kgururaj
  1

• jar from maven fails to load library on Travis-CI

  #34 opened 8 years ago by lbergelson
  30

• An installation problem with libraries in /usr/lib64?

  #31 opened 8 years ago by angelvillahozbaleta
  2

• alignment store in GenomicDB

  #16 opened 8 years ago by jim-bo
  1

• m

  #15 opened 8 years ago by jacmarjorie
  0