JasonAHendry

JasonAHendry's Stars

• torvalds/linux

  Linux kernel source tree

  Language:C186k7.8k054.7k

• donnemartin/data-science-ipython-notebooks

  Data science Python notebooks: Deep learning (TensorFlow, Theano, Caffe, Keras), scikit-learn, Kaggle, big data (Spark, Hadoop MapReduce, HDFS), matplotlib, pandas, NumPy, SciPy, Python essentials, AWS, and various command lines.

  Language:Python27.7k1.6k417.9k

• gabime/spdlog

  Fast C++ logging library.

  Language:C++25k4412.2k4.6k

• rlabbe/Kalman-and-Bayesian-Filters-in-Python

  Kalman Filter book using Jupyter Notebook. Focuses on building intuition and experience, not formal proofs. Includes Kalman filters,extended Kalman filters, unscented Kalman filters, particle filters, and more. All exercises include solutions.

  Language:Jupyter Notebook17k4663304.2k

• TheCherno/Hazel

  Hazel Engine

  Language:C++11.9k4062911.5k

• pypa/sampleproject

  A sample project that exists for PyPUG's "Tutorial on Packaging and Distributing Projects"

  Language:Python5.2k109951.7k

• CellProfiler/CellProfiler

  An open-source application for biological image analysis

  Language:Python934463.3k384

• kthohr/stats

  A C++ header-only library of statistical distribution functions.

  Language:C++536312172

• luntergroup/octopus

  Bayesian haplotype-based mutation calling

  Language:C++3051926937

• InstituteforDiseaseModeling/covasim

  COVID-19 Agent-based Simulator (Covasim): a model for exploring coronavirus dynamics and interventions

  Language:Python25624204225

• primer3-org/primer3

  Primer3 is a command line tool to select primers for polymerase chain reaction (PCR).

  Language:C239116866

• smarco/WFA-paper

  Wavefront alignment algorithm (WFA): Fast and exact gap-affine pairwise alignment

  Language:C201142716

• LooseLab/readfish

  CLI tool for flexible and fast adaptive sampling on ONT sequencers

  Language:Python1701427534

• BDI-pathogens/OpenABM-Covid19

  OpenABM-Covid19: an agent-based model for modelling the spread of SARS-CoV-2 (coronavirus) and control interventions for the Covid-19 epidemic

  Language:Python115196575

• andyrimmer/Platypus

  Platypus Variant Caller

  Language:Python105187538

• broadinstitute/gamgee

  A C++14 library for NGS data formats

  Language:C++405121113

• mkerin/LEMMA

  LEMMA (Linear Environment Mixed Model Analysis) aims to uncover GxE interactions between SNPs and a linear combination of multiple environmental variables.

  Language:C++12290

• winni2k/GLPhase

  A tool for phasing and imputing haplotypes in 10k+ low coverage sequencing samples

  Language:C++10302

• sanjaynagi/AnoPrimer

  Primer Design in Anopheles gambiae and funestus considering genetic variation

  Language:Jupyter Notebook22334

• ronammar/ttc_delays

  1100