JasonAHendry

JasonAHendry's Stars

• torvalds/linux

  Linux kernel source tree

  Language:C186k7.8k054.7k

• gabime/spdlog

  Fast C++ logging library.

  Language:C++24.9k4412.2k4.6k

• facebookresearch/hydra

  Hydra is a framework for elegantly configuring complex applications

  Language:Python8.9k1301.4k650

• filipdutescu/modern-cpp-template

  A template for modern C++ projects using CMake, Clang-Format, CI, unit testing and more, with support for downstream inclusion.

  Language:CMake1.8k3835215

• lh3/seqtk

  Toolkit for processing sequences in FASTA/Q formats

  Language:C1.4k62176307

• arq5x/bedtools2

  bedtools - the swiss army knife for genome arithmetic

  Language:C94758837287

• kigster/cmake-project-template

  This project is aimed at jump-starting a C/C++ project that can build libraries, binaries and have a working unit test suite. It uses CMake build system and is deliberately completely minimal.

  Language:C++901215255

• antfu/iroiro

  Beautiful Colors Lookup in CLI

  Language:TypeScript75815231

• nanoporetech/dorado

  Oxford Nanopore's Basecaller

  Language:C++565311.2k68

• benjjneb/dada2

  Accurate sample inference from amplicon data with single nucleotide resolution

  Language:R482392k144

• dellytools/delly

  DELLY2: Structural variant discovery by integrated paired-end and split-read analysis

  Language:C++45434366138

• bactopia/bactopia

  A flexible pipeline for complete analysis of bacterial genomes

  Language:Nextflow4241452873

• whatshap/whatshap

  Read-based phasing of genomic variants, also called haplotype assembly

  Language:Python3451448640

• mbhall88/rasusa

  Randomly subsample sequencing reads or alignments

  Language:Rust21964117

• EBI-Metagenomics/emg-viral-pipeline

  VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies

  Language:Python12877216

• esteinig/nanoq

  Minimal but speedy quality control for nanopore reads in Rust :bear:

  Language:Rust12854310

• wrpearson/fasta36

  Git repository for FASTA36 sequence comparison software

  Language:C118135817

• genome/breakdancer

  SV detection from paired end reads mapping

  Language:C++117472542

• twolinin/longphase

  Language:C1074569

• gear-genomics/tracy

  Basecalling, alignment, assembly and deconvolution of Sanger Chromatogram trace files

  Language:C++10175221

• helske/seqHMM

  Multivariate and Multichannel Discrete Hidden Markov Models for Categorical Sequences

  Language:R9696630

• TuringLang/AbstractMCMC.jl

  Abstract types and interfaces for Markov chain Monte Carlo methods

  Language:Julia8994419

• odelaneau/shapeit5

  Segmented HAPlotype Estimation and Imputation Tool

  Language:C++73410012

• vplagnol/ExomeDepth

  ExomeDepth R package for the detection of copy number variants in exomes and gene panels using high throughput DNA sequencing data.

  Language:C6765927

• at-cg/minichain

  Long-read aligner to pangenome graphs

  Language:C26423

• stuckyb/seqtrace

  User-friendly software for viewing and processing Sanger DNA sequencing trace files.

  Language:Python224188

• malariagen/pipelines

  Pipelines for processing malaria parasite and mosquito genome sequence data.

  Language:WDL14143113

• Genomicsplc/wecall

  Fast, accurate and simple to use command line tool for variant detection in NGS data.

  Language:C++104134

• iTaxoTools/Hapsolutely

  Reconstruct haplotypes and produce genealogy graphs from population data

  Language:Python20170

• altairwei/bioutils

  C++ Library written to solve the ROSALIND problems

  Language:C++1200