genome/breakdancer

Issues

• Different chromosomes labeled as ITX

  #31 opened 6 years ago by weishwu
  1

• problems with bam2cfg

  #25 opened 6 years ago by dribattista
  2

• How to get the orientation of INV and translocations?

  #27 opened 6 years ago by weishwu
  1

• Error during make

  #30 opened 6 years ago by stanedav
  0

• Problems with breakdancer outputs

  #29 opened 6 years ago by unique379r
  0

• install instructions incorrect

  #9 opened 9 years ago by igordot
  29

• Problem in installing breakdancer

  #22 opened 7 years ago by amrita1983
  1

• bam2cfg error

  #28 opened 6 years ago by xrainbowf
  0

• How to manually prepare a configuration file

  #26 opened 6 years ago by lslochov
  0

• multiple bam SV detection

  #20 opened 8 years ago by guillaume-rs
  4

• How can make breakdancer provide genotype information of an SV?

  #24 opened 6 years ago by jiangyuanluo
  0

• Empty .cfg

  #23 opened 7 years ago by durwa004
  0

• error in building "samtools-lib-build"

  #18 opened 8 years ago by Hiuyu
  11

• linking error: BamConfigEntry.cpp:(.text+0x1686): undefined reference to boost::re_detail::perl_matcher

  #21 opened 7 years ago by zijuexiansheng
  0

• Discrepancies between BreakdancerMax default parameter run and -t option run

  #15 opened 9 years ago by idarolti
  1

• Questions about the mechanism of breakdancer-max

  #19 opened 8 years ago by jiadong324
  0

• Output bed file positions

  #10 opened 9 years ago by ponizvezdochka
  5

• No error messages when a job doesn't finish properly

  #17 opened 8 years ago by wjaratlerdsiri
  0

• BreakDancer-1.1.2 Cpp runtime: taking too long ...

  #16 opened 9 years ago by MMesbahU
  0

• Sourceforge page hosting old versions?

  #13 opened 9 years ago by smowton
  1

• Compiling breakdancer: ` undefined reference to `std::__detail::_List_node_base::_M_hook`

  #14 opened 9 years ago by lindenb
  2

• Drastic differences between identical breakdancer runs

  #7 opened 9 years ago by fpbarthel
  18

• Documentation should include information on what the flags mean out of bam2cfg

  #8 opened 9 years ago by ernfrid
  0

• breakdancer to vcf

  #6 opened 10 years ago by boboppie
  1

• bam2cfg should provide feedback to the user about potential BAM problems

  #5 opened 11 years ago by ernfrid
  0