Kingsford-Group/scallop

Issues

• FR - firststrand meaning

  #38 opened 2 years ago by ttttuck
  1

• problem with assign novel isoforms to annotated gene

  #39 opened 2 years ago by Drosofriends
  1

• Plant specific scallop parameters

  #33 opened 3 years ago by sanyalab
  2

• Not real transcripts fusioin

  #37 opened 3 years ago by Huangyizhong
  0

• Long-read RNA-seq assembly

  #36 opened 3 years ago by q1134269149
  0

• Which parameter can be used to filter the scallop result?

  #35 opened 3 years ago by Huangyizhong
  2

• CCS Header File

  #21 opened 5 years ago by ddubocan
  6

• How to filter the results from the scallop or deal with the bam file?

  #34 opened 3 years ago by Huangyizhong
  2

• question

  #30 opened 3 years ago by xizhesun
  1

• Binary download not available?

  #31 opened 3 years ago by jjv5
  1

• conda installs 0.10.4 not 0.10.5 for scallop

  #32 opened 3 years ago by sanyalab
  1

• Question about exon extension events

  #26 opened 5 years ago by aleighbrown
  6

• Finding common and different genes between species

  #29 opened 4 years ago by mictadlo
  0

• isoforms reduction

  #28 opened 4 years ago by mictadlo
  0

• link is deactivate

  #25 opened 5 years ago by abearab
  1

• Difference between Scallop-LR and Scallop releases ?

  #23 opened 5 years ago by LehmannN
  2

• Difference between Scallop-LR and Scallop releases ?

  #24 opened 5 years ago by LehmannN
  0

• gtfcuff compile error

  #22 opened 5 years ago by LegebekeJ
  2

• Why scallop produce same transcript but with different gene id

  #20 opened 5 years ago by azyro
  12

• Bioconda package?

  #14 opened 5 years ago by sschmeier
  4

• How to limit the length of assembled transcripts

  #19 opened 6 years ago by azyro
  1

• Scallop-LR works on nanopore reads?

  #16 opened 6 years ago by LuyiTian
  1

• scallop parameters min_router_count

  #18 opened 6 years ago by azyro
  1

• Compiling Scallop-LR v0.9.1: are files missing from the archive?

  #17 opened 6 years ago by andreaswallberg
  1

• Questions. Extracting reads for tx-models

  #15 opened 6 years ago by sschmeier
  3

• On quantification: why suggest using unique.fa+reference.fa instead of all.fa from gffread scallop.gtf

  #13 opened 6 years ago by gudeqing
  1

• Assembly of ONT reads

  #11 opened 6 years ago by CDieterich
  6

• Error on make

  #12 opened 6 years ago by mkleyman
  1

• Multithreading

  #10 opened 7 years ago by lucventurini
  0

• scallop woes

  #9 opened 7 years ago by bhaasIMM
  11

• terminate called after throwing an instance of 'std::logic_error' what(): basic_string::_S_construct NULL not valid

  #8 opened 7 years ago by haidudu
  2

• --preview and --library_type

  #7 opened 7 years ago by lcscs12345
  2

• Compatibility with TACO

  #6 opened 7 years ago by jxf413
  3

• combined BAM files vs multiple BAM files

  #4 opened 7 years ago by gianfilippo
  2

• without genome guide assembly

  #5 opened 7 years ago by yplee614
  2

• deal with multiple bam file ?

  #3 opened 7 years ago by shenweima
  1

• convert scallop gtf to gff3

  #2 opened 7 years ago by tangerzhang
  1

• compilation failed

  #1 opened 7 years ago by lmanchon
  12