Krozard

Krozard's Stars

• All-Hands-AI/OpenHands

  🙌 OpenHands: Code Less, Make More

  Language:Python34k2951.5k3.9k

• ray-project/ray

  Ray is an AI compute engine. Ray consists of a core distributed runtime and a set of AI Libraries for accelerating ML workloads.

  Language:Python33.8k47418.8k5.7k

• patrick-kidger/equinox

  Elegant easy-to-use neural networks + scientific computing in JAX. https://docs.kidger.site/equinox/

  Language:Python2.1k24448141

• lh3/minimap2

  A versatile pairwise aligner for genomic and spliced nucleotide sequences

  Language:C1.8k851.1k412

• duerrsimon/bioicons

  A library of free open source icons for science illustrations in biology and chemistry

  Language:Vue1.4k174475

• pysam-developers/pysam

  Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers samtools, bcftools, and tabix.

  Language:Cython78047925274

• nanoporetech/dorado

  Oxford Nanopore's Basecaller

  Language:C++525311.1k62

• CSBDeep/CSBDeep

  Image restoration for fluorescence microscopy

  Language:Python283216982

• royerlab/napari-chatgpt

  A napari plugin to process and analyse images with chatGPT!

  Language:CSS245112726

• micro-manager/pycro-manager

  Python control of micro-manager for customized data acquisition

  Language:Jupyter Notebook165829451

• Lee-Gihun/MEDIAR

  (NeurIPS 2022 CellSeg Challenge - 1st Winner) Open source code for "MEDIAR: Harmony of Data-Centric and Model-Centric for Multi-Modality Microscopy"

  Language:Python14151929

• nanoporetech/modkit

  A bioinformatics tool for working with modified bases

  Language:Rust139132868

• welch-lab/MultiVelo

  Multi-omic velocity inference

  Language:Python10773411

• google/microscopeimagequality

  Language:Python908033

• HenriquesLab/NanoPyx

  Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging

  Language:Jupyter Notebook6312258

• fiberseq/fibertools-rs

  Tools for fiberseq data written in rust.

  Language:Rust422345

• micro-manager/pymmcore

  Python bindings for MMCore, Micro-Manager's device control layer

  Language:Python337368

• Waller-Lab/DeepAutofocus

  Single-shot autofocus on microscopes using deep learning

  Language:Jupyter Notebook30427

• alonsaguy/DBlink

  132

• vanTeeffelenLab/ExTrack

  ExTrack MLE for diffusive noisy single-particle tracks

  Language:Jupyter Notebook12315

• kjamartens/TARDIS-public

  Public releases of TARDIS

  Language:MATLAB11132

• knutdrescher/BiofilmQ

  BiofilmQ: a software tool for quantitative image analysis of microbial biofilm communities

  Language:MATLAB7292

• ha-park/Pix2D-NN-diffusivity-mapping

  Language:MATLAB6201

• KisleyLabAtCWRU/fcsSOFI

  Language:CMake61

• hatzakislab/SEMORE

  SEMORE is a multi-layered density-based clustering module to dissect biological assemblies and a morphology fingerprinting module for quantification by multiple geometric and kinetics-based descriptors.

  Language:Python4100

• fiberseq/train-m6A-calling

  ML methods for m6A-calling

  Language:Jupyter Notebook3301

• GreenleafLab/amplicon-smf

  Code for processing single-molecule footprinting data on synthetic amplicons (from Doughty*, Hinks*, Schaepe*, et al. 2024).

  Language:Python2130

• welsherlab/3DSMART

  Language:MATLAB21

• alecheckert/sptPALMsim

  An optical-dynamic simulator for experiments supporting a state array paper

  Language:Python1100

• jkmckenna/smftools

  Single Molecule Footprinting Analysis in Python

  Language:Python1200