Li-ZhiD

Li-ZhiD's Stars

• qianguyihao/Mac-list

  Mac软件清单、Mac使用技巧整理，正在不断完善中。努力做到最全。

  2.9k9714414

• yeayee/joyful-pandas

  Pandas中文教程

  Language:Jupyter Notebook955260499

• catofmrlu/MacApps

  个人收集的一些mac使用的不易找到的app，不断更新中。

  780481999

• deeptools/pyGenomeTracks

  python module to plot beautiful and highly customizable genome browser tracks

  Language:Python76430209111

• Ming-Lian/NGS-analysis

  二代测序数据分析

  346121162

• BayraktarLab/cell2location

  Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)

  Language:Python313724157

• bioFAM/MOFA2

  Multi-Omics Factor Analysis

  Language:R3021413652

• aidenlab/Juicebox

  Visualization and analysis software for Hi-C data -

  Language:Java2422382458

• statOmics/tradeSeq

  TRAjectory-based Differential Expression analysis for SEQuencing data

  Language:HTML238725027

• theislab/paga

  Mapping out the coarse-grained connectivity structures of complex manifolds.

  Language:Jupyter Notebook206102933

• cortes-ciriano-lab/SComatic

  A tool for detecting somatic variants in single cell data

  Language:Python16446225

• wheaton5/souporcell

  Clustering scRNAseq by genotypes

  Language:Python1641122946

• zktuong/ktplots

  Some tools for plotting single-cell data

  Language:R16235531

• theislab/scCODA

  A Bayesian model for compositional single-cell data analysis

  Language:Jupyter Notebook14899024

• theislab/zellkonverter

  Conversion between scRNA-seq objects

  Language:R14859827

• tiroshlab/3ca

  Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".

  Language:R72269

• linnarsson-lab/adult-human-brain

  Cytograph version used for adult human-brain analysis

  Language:Jupyter Notebook7121513

• ay-lab/dcHiC

  dcHiC: Differential compartment analysis for Hi-C datasets

  Language:R6059410

• willtownes/nsf-paper

  Nonnegative spatial factorization for multivariate count data

  Language:Jupyter Notebook5421111

• t-neumann/slamdunk

  Streamlining SLAM-seq analysis with ultra-high sensitivity

  Language:Python38515023

• wososa/PSI-Sigma

  PSI-Sigma

  Language:Perl3536610

• yingyonghui/CommPath

  R toolkit for inference and analysis of pathway-mediated cell-cell communication chain from single-cell transcriptomics

  Language:R34280

• jlaffy/infercna

  Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data

  Language:R2651316

• wanglab-broad/mCNS-atlas

  Language:Jupyter Notebook17034

• ventolab/MFI

  Language:Jupyter Notebook13513

• linlabcode/CRC

  Language:Python96

• ocroci/ChroKit

  A Shiny-based framework to analyze and visualize interactively genomic data

  Language:R9112

• OliInTheValley/SpatioTemporal_Analysis

  This GitHub repository documents the findings of a spatiotemporal RNA-seq study on mouse brain aging, including 1,076 samples from 15 regions spanning 7 ages and two rejuvenating interventions.

  Language:R62

• jpmam1/scalop

  Single Cell Analysis Operations

  Language:R43

• linnarsson-lab/auto-annotation-ah

  Auto-annotations for analysis of the adult human brain

  4112