LieberInstitute/VistoSeg

Issues

• splitSlide show error messages

  #20 opened 7 months ago by lihuamei
  0

• Error while running the corrected countSpots_centroid.m code

  #19 opened a year ago by Ukaipa9
  1

• Clarify the docs due to differences between Visium and Visium SPG processing pipeline steps

  #18 opened 2 years ago by lcolladotor
  2

• update countSpots() function to count nuclei/spot based on centroid of nuclei

  #15 opened 2 years ago by madhavitippani
  1

• Update citation information

  #17 opened 2 years ago by lcolladotor
  1

• update refineVNS() to provide csv with shape and size metrics

  #13 opened 2 years ago by madhavitippani
  1

• Getting cropped spot images

  #16 opened 2 years ago by ahmetrifaioglu
  1

• create thresholding function based on refineVNS() metric.csv output

  #14 opened 2 years ago by madhavitippani
  0

• fine tuning segmentation step

  #12 opened 3 years ago by skim245
  4

• image requirements

  #11 opened 3 years ago by skim245
  1

• Reviews are back

  #10 opened 3 years ago by stephaniehicks
  2

• bookdown info

  #9 opened 3 years ago by lcolladotor
  0

• Citation information and software name

  #3 opened 3 years ago by lcolladotor
  0

• Avoid full paths

  #5 opened 3 years ago by lcolladotor
  0

• Be more verbose and describe code chunks

  #6 opened 3 years ago by lcolladotor
  1

• Explain how to download the data used in this documentation

  #2 opened 4 years ago by lcolladotor
  2

• Add software requirements

  #4 opened 4 years ago by lcolladotor
  0

• Write a short paper about your software

  #7 opened 4 years ago by lcolladotor
  0

• OSTA vs the documentation in this repo

  #8 opened 4 years ago by lcolladotor
  0

• Explain Visium and/or the data used in this documentation

  #1 opened 4 years ago by lcolladotor
  0