LieberInstitute/spatialLIBD

Issues

• [BUG] fetch_data fails

  #85 opened 2 months ago by stemangiola
  2

• [BUG] fetch data spe failed

  #84 opened 3 months ago by hym97
  4

• [BUG] Reporting of Missing Genes in Spot Plots multi-gene functionality

  #83 opened 5 months ago by cyntsc
  1

• [BUG] `sort_clusters` creates arbitary numeric seqences as legend labels in `vis_grid_clus` plots.

  #77 opened 5 months ago by boyiguo1
  1

• [BUG] vis_grid_clus cannot handle logical variables

  #80 opened 5 months ago by lahuuki
  1

• [Feature Request] Host Visium LS data through `fetch_data()`

  #81 opened 5 months ago by Nick-Eagles
  0

• [BUG] Fail to obtain the spe data of DLPFC

  #79 opened 6 months ago by YikaiLou
  4

• upload multiple Visium samples to the spatialLIBD shiny app

  #76 opened 8 months ago by cathalgking
  3

• Fail to obtain the spe data of DLPFC through fetch_data()

  #73 opened 7 months ago by YSPeng1225
  6

• Add support for non-Visium data and/or SpatialFeatureExperiment

  #61 opened a year ago by lcolladotor
  3

• shiny_updates issues

  #75 opened 8 months ago by lcolladotor
  4

• [Feature Request] registration_wrapper(): create and check validity of eventual pseudobulk factor names before starting

  #48 opened a year ago by berniejmulvey
  3

• Error in loading app locally

  #71 opened a year ago by dimurali93
  1

• Improve the code for when `key` is present

  #31 opened 3 years ago by lcolladotor
  0

• Check default shiny app color code

  #32 opened 3 years ago by lcolladotor
  1

• Add functions for running statistical models

  #33 opened 2 years ago by lcolladotor
  18

• Add an `n` argument to `layer_stat_cor()`.

  #34 opened 3 years ago by lcolladotor
  0

• Error in BiocFileCache::bfcrpath(bfc, url)

  #35 opened 3 years ago by SiyuanHuang1
  3

• an error when use check_sce() function

  #37 opened 3 years ago by SiyuanHuang1
  6

• problem with read10xVisiumWrapper function

  #38 opened 3 years ago by abspangler13
  1

• Trouble loading two gene sets

  #39 opened 2 years ago by abspangler13
  1

• [BUG] Cannot resume manual annotation

  #40 opened 2 years ago by lcolladotor
  2

• [BUG] Errors are shown when you select a gene for which there are no modeling results

  #41 opened 2 years ago by lcolladotor
  0

• Update document of `sampleid` argument in viz_clus

  #42 opened 2 years ago by boyiguo1
  2

• Color Blending for NA values in `vis_clus`

  #43 opened a year ago by boyiguo1
  3

• Want to download the full real data (spe) to use

  #45 opened 2 years ago by zhang-TD
  1

• [BUG] fetch_data(type = "spe") yields "Error: Other 'type' values are not supported."

  #47 opened a year ago by george-hall-ucl
  1

• [Feature Request] Enable Biocparallel-based execution of registration_wrapper steps

  #49 opened a year ago by berniejmulvey
  3

• [BUG] run_app() error in frame_limits in newer R version

  #51 opened a year ago by erkinacar5
  1

• Unable to deploy iSEE app to Shinyapps.io

  #74 opened 8 months ago by RyAMiller
  1

• [BUG] Error during extract and reformat enrichment results when using `registration_wrapper`

  #72 opened a year ago by boyiguo1
  3

• Switch to using rlang and cli

  #70 opened a year ago by lcolladotor
  0

• Translate course and intro documentation to Spanish

  #69 opened a year ago by lcolladotor
  0

• Create video guide for spatialLIBD web applications

  #67 opened a year ago by lcolladotor
  0

• Design a 2 day workshop / short course

  #68 opened a year ago by lcolladotor
  0

• Add support for inspecting colors to visual impairment + guide for choosing colors

  #66 opened a year ago by lcolladotor
  0

• Allow users to write custom shiny code for web applications

  #65 opened a year ago by lcolladotor
  0

• Determine limits of dataset size that can be supported by shinyapps.io + document Amazon AWS deployment

  #64 opened a year ago by lcolladotor
  0

• Improve data access organization and documentation

  #56 opened a year ago by lcolladotor
  0

• Expand utilities for exploring spatial data

  #63 opened a year ago by lcolladotor
  0

• Modularize interactive code

  #62 opened a year ago by lcolladotor
  0

• Enhance frame limit detection

  #60 opened a year ago by lcolladotor
  0

• Add support for dream by Gabriel Hoffman

  #57 opened a year ago by lcolladotor
  0

• Create guide for shinyapps.io deployment

  #59 opened a year ago by lcolladotor
  0

• Refactor guide for external datasets

  #58 opened a year ago by lcolladotor
  0

• Deposit published data on ExperimentHub

  #55 opened a year ago by lcolladotor
  0

• Use ComplexHeatmap

  #54 opened a year ago by lcolladotor
  0

• Add support for visualizing stitched capture areas

  #53 opened a year ago by lcolladotor
  0

• Improve code coverage

  #52 opened a year ago by lcolladotor
  0

• [BUG] An error when using registration_wrapper().

  #50 opened a year ago by GGFranck
  0