NGSEP/NGSEPcore
NGSEP is an integrated framework for analysis of high throughput sequencing (HTS) reads. The main functionality of NGSEP is the variants detector, which allows to make integrated discovery and genotyping of Single Nucleotide Variants (SNVs), insertions, deletions, and genomic regions with copy number variation (CNVs).
JavaGPL-3.0
Issues
- 0
Out of memory
#53 opened by diriano - 0
Demultiplex with txt file with two columns
#52 opened by Rem1burwell - 6
- 3
Low coverage samples
#47 opened by kcleal - 1
How to get a vcf output from SV calling pipeline?
#46 opened by kcleal - 1
- 1
- 3
Making NGSEP 4.2.1
#42 opened by Rem1burwell - 3
Exception in thread "pool-1-thread-1" java.lang.NoSuchMethodError: java.nio.ByteBuffer.clear()Ljava/nio/ByteBuffer
#41 opened by pjx1990 - 1
VCF output from GBS de novo is truncated
#38 opened by edgardomortiz - 1
error sequence dictionary and index
#40 opened by danessel - 3
- 1
DeNovoGBS, max k-mer size
#37 opened by MWSchmid - 1
'0/1' genotypes a vcf generated with SingleSampleVariantsDetector a -ploidy 1 option
#33 opened by Acanthodasha - 1
Empty Vcf file
#30 opened by hafizmtalha - 0
- 1
Probblem converting VCF to Joinmap format
#3 opened by avdanurag