Phlya

Phlya's Stars

• spyder-ide/spyder

  Official repository for Spyder - The Scientific Python Development Environment

  Language:Python8.5k29318.8k1.6k

• more-itertools/more-itertools

  More routines for operating on iterables, beyond itertools

  Language:Python3.8k42355291

• jmcarpenter2/swifter

  A package which efficiently applies any function to a pandas dataframe or series in the fastest available manner

  Language:Python2.6k30150101

• EntilZha/PyFunctional

  Python library for creating data pipelines with chain functional programming

  Language:Python2.4k50138133

• snakemake/snakemake

  This is the development home of the workflow management system Snakemake. For general information, see

  Language:HTML2.3k201.8k562

• jupyter-lsp/jupyterlab-lsp

  Coding assistance for JupyterLab (code navigation + hover suggestions + linters + autocompletion + rename) using Language Server Protocol

  Language:TypeScript1.8k20573148

• MouseLand/cellpose

  a generalist algorithm for cellular segmentation with human-in-the-loop capabilities

  Language:Jupyter Notebook1.4k29921416

• proplot-dev/proplot

  🎨 A succinct matplotlib wrapper for making beautiful, publication-quality graphics

  Language:Python1.1k21356104

• bashtage/linearmodels

  Additional linear models including instrumental variable and panel data models that are missing from statsmodels.

  Language:Python95825177184

• pyranges/pyranges

  Performant Pythonic GenomicRanges

  Language:Python4481322146

• webermarcolivier/statannot

  add statistical annotations (pvalue significance) on an existing boxplot generated by seaborn boxplot

  Language:Jupyter Notebook396105874

• vanheeringen-lab/genomepy

  genes and genomes at your fingertips

  Language:Python387612538

• miyakogi/m2r

  Markdown to reStructuredText converter

  Language:Python303951119

• gosling-lang/gos

  A declarative interactive genomics visualization library for Python.

  Language:Python21934814

• anntzer/defopt

  Effortless argument parser

  Language:Python21797211

• snakemake/snakemake-wrappers

  This is the development home of the Snakemake wrapper repository, see

  Language:Python2169132186

• scikit-hep/awkward-0.x

  Manipulate arrays of complex data structures as easily as Numpy.

  Language:Python2151512739

• haowenz/chromap

  Fast alignment and preprocessing of chromatin profiles

  Language:C++195711021

• open2c/bioframe

  Genomic interval operations on Pandas DataFrames

  Language:Python1771210930

• snakemake/snakefmt

  The uncompromising Snakemake code formatter

  Language:Python154712729

• brentp/cruzdb

  python access to UCSC genomes database

  Language:Python135172242

• developers-against-repressions/network-case

  Language:Python9458347

• ay-lab/mustache

  Multi-scale Detection of Chromatin Loops from Hi-C and Micro-C Maps using Scale-Space Representation

  Language:Python6456611

• koszullab/chromosight

  Computer vision based program for pattern recognition in chromosome (Hi-C) contact maps

  Language:Python6314449

• nvictus/pybbi

  Python bindings to UCSC BigWig and BigBed library

  Language:C328173

• cmdoret/hicreppy

  Python reimplementation of hicrep with compatibility for sparse matrices

  Language:Python17252

• portugueslab/flammkuchen

  Flexible HDF5 saving/loading library forked from deepdish (University of Chicago) and maintained by the Portugues lab

  Language:Python16165

• gspracklin/hmm_bigwigs

  using hmm on bigwigs

  Language:Python8261

• reservoirgenomics/resgen-python

  Language:Python63

• GermanDemidov/compbio_underhood

  Everything regarding the compbio underhood account on twitter

  3200