Phlya

Phlya's Stars

• numpy/numpy

  The fundamental package for scientific computing with Python.

  Language:Python28.4k59913k10.2k

• HigherOrderCO/Bend

  A massively parallel, high-level programming language

  Language:Rust17.8k99262439

• scipy/scipy

  SciPy library main repository

  Language:Python13.2k35010.5k5.2k

• marimo-team/marimo

  A reactive notebook for Python — run reproducible experiments, execute as a script, deploy as an app, and version with git.

  Language:Python8.7k45901317

• bioconda/bioconda-recipes

  Conda recipes for the bioconda channel.

  Language:Shell1.7k961.9k3.3k

• Phlya/adjustText

  A small library for automatically adjustment of text position in matplotlib plots to minimize overlaps.

  Language:Jupyter Notebook1.5k1015987

• pdoc3/pdoc

  :snake: :arrow_right: :scroll: Auto-generate API documentation for Python projects

  Language:Python1.1k10323148

• manzt/anywidget

  reusable widgets made easy

  Language:Python527912839

• soft-matter/trackpy

  Python particle tracking toolkit

  Language:Python45720421132

• nservant/HiC-Pro

  HiC-Pro: An optimized and flexible pipeline for Hi-C data processing

  Language:Python39018610181

• ponnhide/patchworklib

  Patchwork for matplotlib: A subplot manager for intuitive layouts in matplotlib, seaborn, and plotnine.

  Language:Jupyter Notebook38874725

• maximtrp/scikit-posthocs

  Multiple Pairwise Comparisons (Post Hoc) Tests in Python

  Language:Python35456140

• deeptools/HiCExplorer

  HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.

  Language:Python2351563370

• lmcinnes/glasbey

  Algorithmically create or extend categorical colour palettes

  Language:Python204357

• pyapp-kit/cmap

  Scientific colormaps for python, with only numpy dependency

  Language:Python883205

• XiaoTaoWang/HiCLift

  A fast and efficient tool for converting chromatin interaction data between genome assemblies

  Language:Python683185

• abdenlab/oxbow

  Read specialized NGS formats as data frames in R, Python, and more.

  Language:Rust657178

• msbentsen/plotannot

  A small python library to adjust and annotate axis ticklabels in plots.

  Language:Python52111

• dejunlin/hicrep

  Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support

  Language:Python361157

• paulsengroup/hictk

  Blazing fast toolkit to work with .hic and .cool files

  Language:C++252421

• holoviz-dev/nbsmoke

  Basic notebook checks. Do they run? Do they contain lint?

  Language:Python176356

• gerlichlab/hicognition

  A visual exploration and hypothesis testing tool for 3D genomics

  Language:Python131222

• MNoichl/pylabeladjust

  A small python port of Gephi's Label-Adjust algorithm. Makes labels in matplotlib-plots, or more generally, rectangles, not overlap.

  Language:Jupyter Notebook7100

• open2c/inspectro

  Hi-C spectral analysis workflow

  Language:Python7242

• open2c/inspectro-nf

  Language:Python7802

• efriman/PeakPredict

  Peak overlaps and feature predictions

  Language:Python60

• open2c/distiller-sm

  a Snakemake version of distiller - the Open2C Hi-C mapping workflow

  Language:Python48163

• open2c/open2c_vignettes

  A collection of notebooks and gists demonstrating novel applications of open2c ecosystem of tools

  Language:Jupyter Notebook4822

• nvictus/coltab

  Columnar tables

  Language:Python3200

• efriman/Friman_etal_ULI

  Source code for custom analysis performed for Friman et al. 2023 (Genome Research)

  Language:Jupyter Notebook2100