RNAcentral/R2DT

Issues

• outdated link to CRW2: Comparative RNA Web-2

  #138 opened 2 months ago by ValWood
  0

• Considerations for external implementations of R2DT widget

  #137 opened 2 months ago by ValWood
  6

• Switch to relative coordinates

  #131 opened 9 months ago by AntonPetrov
  6

• Use Typer and Rich

  #133 opened 9 months ago by AntonPetrov
  0

• Improve thumbnail images

  #130 opened 9 months ago by AntonPetrov
  0

• Add --verbose option to control reporting

  #114 opened 9 months ago by AntonPetrov
  0

• Update Traveler to latest version

  #128 opened 9 months ago by AntonPetrov
  0

• Improve handling of sequences with MultipleHits warnings

  #125 opened 10 months ago by AntonPetrov
  0

• Bundle Rfam seeds into cms tarball?

  #124 opened 10 months ago by afg1
  2

• Possible off-by-one error?

  #121 opened 10 months ago by pzhaojohnson
  1

• Use --detail option with tRNAscan-SE

  #97 opened 2 years ago by patriciaplchan
  0

• Switch to Python API where possible

  #113 opened a year ago by AntonPetrov
  0

• Speed up template selection using Ribovore + Blast

  #115 opened a year ago by AntonPetrov
  0

• Checklist for release 1.4

  #86 opened 2 years ago by AntonPetrov
  0

• Make it easier to update Traveler

  #56 opened a year ago by AntonPetrov
  0

• Colour diagrams based on residue-level data

  #55 opened a year ago by AntonPetrov
  1

• Update tRNA models

  #83 opened a year ago by AntonPetrov
  0

• Update Type T RNase P RNA templates

  #84 opened a year ago by AntonPetrov
  1

• Integrate with RNAFramework

  #108 opened a year ago by AntonPetrov
  0

• Use JSON Schema for creating new templates

  #77 opened a year ago by AntonPetrov
  1

• Secondary feature annotations (helix, ES, etc)

  #107 opened a year ago by joegeorgeson
  2

• Integrate with an interactive editing interface

  #73 opened a year ago by AntonPetrov
  10

• Host docs on RTD

  #88 opened a year ago by AntonPetrov
  1

• Feature request: Download RNA2D schema from R2DT widget

  #101 opened a year ago by Psirving
  4

• Include name in json schema output

  #100 opened a year ago by AntonPetrov
  0

• Models missing in R2DT v1.3 cms

  #99 opened 2 years ago by afg1
  1

• Use alignments from tRNAscan-SE without re-creating them in R2DT

  #98 opened 2 years ago by patriciaplchan
  0

• Temp file collision causing cluster jobs to hang

  #96 opened 2 years ago by afg1
  3

• View structures with pseudoknots

  #91 opened 2 years ago by VonBoss
  5

• Infernal mapping not working for "depaired" and "constrained" structures

  #93 opened 2 years ago by AntonPetrov
  0

• Use more precise SO terms for mt rRNAs

  #87 opened 2 years ago by blakesweeney
  0

• Checklist for release 1.3

  #82 opened 2 years ago by AntonPetrov
  0

• Add API and UI support for constrained folding

  #74 opened 2 years ago by AntonPetrov
  9

• Prevent duplicate labels in templates

  #63 opened 2 years ago by blakesweeney
  0

• Add a flag to override ribovore filters

  #75 opened 2 years ago by AntonPetrov
  0

• Add Solanum lycopersicum templates

  #65 opened 2 years ago by AntonPetrov
  0

• Fix inconsistent secondary structure in Rfam template RF00003

  #67 opened 2 years ago by AntonPetrov
  0

• Make a curated template for HCV IRES

  #62 opened 2 years ago by AntonPetrov
  0

• r2dt/traveller segfault for some sequences/models

  #81 opened 2 years ago by afg1
  3

• 5.8S sequences folded differently

  #61 opened 3 years ago by nawrockie
  2

• R2DT does not generate a 2D for URS000026BDF0_9606

  #79 opened 2 years ago by blakesweeney
  2

• Store constrained folding and fold type info in tsv

  #80 opened 2 years ago by carlosribas
  0

• Create an option to display full sequence in Traveler's layout

  #78 opened 2 years ago by aspetr01
  0

• Integrate with JAR3D

  #72 opened 2 years ago by AntonPetrov
  1

• Label each nucleotide in SVG with the index of input sequence

  #76 opened 2 years ago by blakesweeney
  3

• Use templates from 'The interaction networks of structured RNA'

  #60 opened 3 years ago by blakesweeney
  0

• Zoom centering

  #69 opened 2 years ago by trprcll
  1

• Fail to representing the my sequence ( tRNA-Ser)

  #68 opened 2 years ago by bombumbom
  2

• R2DT fails with complex header lines

  #64 opened 3 years ago by blakesweeney
  0

• Integrate with RiboDraw

  #59 opened 3 years ago by AntonPetrov
  4