SilasK

SilasK's Stars

• jwilber/roughViz

  Reusable JavaScript library for creating sketchy/hand-drawn styled charts in the browser.

  Language:JavaScript6.7k5633226

• biopython/biopython

  Official git repository for Biopython (originally converted from CVS)

  Language:Python4.4k1711.7k1.8k

• snakemake/snakemake

  This is the development home of the workflow management system Snakemake. For general information, see

  Language:HTML2.3k201.8k561

• kblin/ncbi-genome-download

  Scripts to download genomes from the NCBI FTP servers

  Language:Python97035145173

• deeptools/pyGenomeTracks

  python module to plot beautiful and highly customizable genome browser tracks

  Language:Python78231210115

• rrwick/Unicycler

  hybrid assembly pipeline for bacterial genomes

  Language:C++57330330136

• Ecogenomics/GTDBTk

  GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.

  Language:Python4892346682

• manubot/rootstock

  Clone me to create your Manubot manuscript

  Language:HTML45419257181

• ParBLiSS/FastANI

  Fast Whole-Genome Similarity (ANI) Estimation

  Language:C++3821313267

• RasmussenLab/vamb

  Variational autoencoder for metagenomic binning

  Language:Python266723147

• pangenome/odgi

  Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs

  Language:C++1981314941

• dnbaker/dashing

  Fast and accurate genomic distances using HyperLogLog

  Language:C++160116412

• jerpint/rubiks_cube_convnet

  How to train a convnet to solve a rubiks cube

  Language:Python1289128

• ctSkennerton/minced

  Mining CRISPRs in Environmental Datasets

  Language:Java10463817

• cschin/Peregrine

  Peregrine: Fast Genome Assembler Using SHIMMER Index

  Language:Jupyter Notebook1018359

• mgoeker/table2itol

  Generating iToL annotations from Spreadsheet or CSV files

  Language:R962540

• HugoBlox/awesome-hugo

  Automate batch edits to your Markdown content. Integrates with static website generators such as Hugo and Gatsby

  Language:Shell809517

• meringlab/FlashWeave.jl

  Inference of microbial interaction networks from large-scale heterogeneous abundance data

  Language:Julia757408

• will-rowe/genome-sketching

  online notebooks for a review of genome sketching

  Language:Jupyter Notebook604110

• zhaoxiaofei/bindash

  Fast and precise comparison of genomes and metagenomes (in the order of terabytes) on a typical personal laptop

  Language:C++585117

• albertyw/itolapi

  Python API for the Interactive Tree of Life (iTOL)

  Language:Python3533411

• cjneely10/MetaSanity

  Pipeline for major biological analyses.

  Language:Python34395

• ggloor/CoDaSeq

  Functions for compositional analysis of high throughput sequencing

  Language:R297312

• reptalex/phylofactor

  Language:R267349

• zifanzhu/MicroPro

  A microbial profiling framework for metagenomic analysis

  Language:R24146

• donovan-h-parks/PhyloRank

  Assign taxonomic ranks based on evolutionary divergence.

  Language:Python233164

• SentientOrange/Rubiks-Cube

  Reinforcement Learning program that looks to be able to quickly learn to solve a Rubik's Cube

  Language:Python15231

• ggloor/ALDEx2_dev

  ALDEx tool to examine compositional high-throughput sequence data with Welch's t-test

  Language:R127396

• snakemake-workflows/accel-amplicon-trimming

  Snakemake workflow implementing Accel Amplicon (Swift) trimming guidelines.

  Language:Python4301

• cjneely10/BioMetaDB

  Use biological data to generate SQL database schema

  Language:Python3101