cschin/Peregrine

Issues

• How can I install Peregrine python packages?

  #34 opened 3 years ago by fmalmeida
  6

• Singularity containers for Peregerine

  #42 opened 3 years ago by gitcruz
  1

• Exception: Some tasks are recently_done but not satisfied

  #33 opened 5 years ago by chhylp123
  6

• Run peregrine with singularity

  #37 opened 4 years ago by RenzoTale88
  1

• Submit a job with peregrine

  #39 opened 4 years ago by RenzoTale88
  1

• Peregrine wihout Docker?

  #31 opened 5 years ago by Tdanis
  9

• assembly contiguity not good - coverage parameter?

  #38 opened 4 years ago by mgraeff
  2

• Docker container's cwd is not root, slight issue with mounting

  #40 opened 4 years ago by Raesearch
  1

• how to produced p_ctg_cns.fa by p_ctg.fa?

  #41 opened 4 years ago by Ahahaha3
  1

• slow: containerized Peregrine on gpfs file system

  #36 opened 5 years ago by ptrebert
  1

• What's `pypeflow.simple_pwatcher_bridge:(slept for another 1100.0s -- another 110 loop iterations)`

  #35 opened 5 years ago by SHuang-Broad
  1

• python2.7: command not found

  #26 opened 5 years ago by zhenzhenyang-psu
  2

• core file produced but final output is created

  #29 opened 5 years ago by aclum
  1

• Upsteam kseq

  #32 opened 5 years ago by Phhere
  1

• Peregrine not recognising options

  #22 opened 5 years ago
  7

• Accuracy column in preads.ovl

  #21 opened 5 years ago by mrvollger
  4

• make all error

  #25 opened 5 years ago by zhenzhenyang-psu
  1

• error in 3-asm

  #20 opened 5 years ago by zhenzhenyang-psu
  2

• pypeflow Error Unable to run the assembly

  #23 opened 5 years ago by sum732
  1

• Racon and Pilon

  #24 opened 5 years ago by mictadlo
  1

• Pypeflow issues

  #10 opened 6 years ago by kautto
  4

• shmr_map issue

  #15 opened 5 years ago by smoretti
  4

• crash in 2-ovlp

  #16 opened 5 years ago by macmanes
  4

• Question on SHIMMER and MC

  #17 opened 5 years ago by kfletcher88
  1

• crash in 3-asm: ovlp_to_graph.py

  #18 opened 5 years ago by rfinkers
  1

• Networkx < 2.4

  #19 opened 5 years ago by mrvollger
  0

• Question about best practices

  #13 opened 5 years ago by cschin
  1

• Add peregrine 'hello world' runbook

  #5 opened 6 years ago by a-khalak
  6

• error in building docker image

  #12 opened 6 years ago by githubrookie1
  1

• Parameters for plant genome

  #4 opened 6 years ago by mycecilia
  8

• Human genome assembly parameters

  #11 opened 6 years ago by kautto
  5

• Add script to identify un-assembled reads

  #9 opened 6 years ago by cschin
  0

• Add a clean up script

  #8 opened 6 years ago by cschin
  0

• Null pointer error during installation

  #2 opened 6 years ago by alima90
  5

• docker errors

  #3 opened 6 years ago by bitcometz
  4