VitaminBrad

VitaminBrad's Stars

• JuliaLang/julia

  The Julia Programming Language

  Language:Julia46k93124.5k5.5k

• lucidrains/denoising-diffusion-pytorch

  Implementation of Denoising Diffusion Probabilistic Model in Pytorch

  Language:Python8.6k362981.1k

• SciML/DifferentialEquations.jl

  Multi-language suite for high-performance solvers of differential equations and scientific machine learning (SciML) components. Ordinary differential equations (ODEs), stochastic differential equations (SDEs), delay differential equations (DDEs), differential-algebraic equations (DAEs), and more in Julia.

  Language:Julia2.9k56889231

• CamDavidsonPilon/lifelines

  Survival analysis in Python

  Language:Python2.4k70971560

• JuliaPy/PyCall.jl

  Package to call Python functions from the Julia language

  Language:Julia1.5k39741189

• microsoft/vscode-jupyter

  VS Code Jupyter extension

  Language:TypeScript1.3k4210.2k294

• SciML/DiffEqFlux.jl

  Pre-built implicit layer architectures with O(1) backprop, GPUs, and stiff+non-stiff DE solvers, demonstrating scientific machine learning (SciML) and physics-informed machine learning methods

  Language:Julia87331397157

• cl3m/MiddleClick

  Emulate a middleclick with triple tap on MacBook trackpad and Magic Mouse.

  Language:Objective-C559220198

• SciML/diffeqpy

  Solving differential equations in Python using DifferentialEquations.jl and the SciML Scientific Machine Learning organization

  Language:Python543209342

• FelixKrueger/Bismark

  A tool to map bisulfite converted sequence reads and determine cytosine methylation states

  Language:HTML39714651103

• rvalieris/parallel-fastq-dump

  parallel fastq-dump wrapper

  Language:Python28485434

• ICB-DCM/pyPESTO

  python Parameter EStimation TOolbox

  Language:Python2261154747

• ChrisRackauckas/universal_differential_equations

  Repository for the Universal Differential Equations for Scientific Machine Learning paper, describing a computational basis for high performance SciML

  Language:Julia220182259

• whitews/FlowKit

  A Python toolkit for flow cytometry analysis supporting GatingML and FlowJo workspaces

  Language:Python158517742

• mojaveazure/seurat-disk

  Interfaces for HDF5-based Single Cell File Formats

  Language:R1561417350

• PEtab-dev/PEtab

  PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology

  601723212

• vahidAK/NanoMethPhase

  Methylation Phasing for Nanopore Sequencing

  Language:Python454254

• matthiaskoenig/sbmlutils

  Python utilities for SBML

  Language:HTML39633912

• alex-trapp/scAge

  Profiling epigenetic age in single cells

  Language:Jupyter Notebook36407

• cthoyt/doctoral-thesis

  📖 Generation and Applications of Knowledge Graphs in Systems and Networks Biology

  Language:TeX29972

• SciML/ReactionNetworkImporters.jl

  Julia Catalyst.jl importers for various reaction network file formats like BioNetGen and stoichiometry matrices

  Language:Julia2711229

• mpg-age-bioinformatics/AGEpy

  Bioinformatics tools for Python

  Language:Python246123

• Meyer-DH/AgingClock

  Language:Python16336

• pathwayforte/pathway-forte

  A Python package for benchmarking pathway database with functional enrichment and classification methods

  Language:Python137166

• chris-maclean/PyWormbase

  An interface to the Wormbase REST API.

  Language:Python3230

• vinaysb/Data-Mining-2019-20

  Ex Solutions for Data mining class

  Language:Jupyter Notebook3404

• AlexH-UB/Box-organizer

  A tool that helps organizing your reaction tubes in a biological lab

  Language:Python2200

• neurord/NeuroRDViz

  Python program to display morphology and particle concentrations

  Language:Python2400

• ucl-cssb/RED

  Reinforcment learning for Experimental Design

  Language:Python2102

• calico/hendrickson_2017_supplement

  Supplemental material for the Hendrickson et. al 2017 paper.

  Language:Python1101