Xiao-Zhong's Stars
JuliaData/DataFrames.jl
In-memory tabular data in Julia
DerrickWood/kraken2
The second version of the Kraken taxonomic sequence classification system
joey711/phyloseq
phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:
JuliaDataScience/JuliaDataScience
Book on Julia for Data Science
benjjneb/dada2
Accurate sample inference from amplicon data with single nucleotide resolution
JuliaPlots/StatsPlots.jl
Statistical plotting recipes for Plots.jl
JuliaStats/HypothesisTests.jl
Hypothesis tests for Julia
gaospecial/ggVennDiagram
A 'ggplot2' implement of Venn Diagram.
felipenoris/XLSX.jl
Excel file reader and writer for the Julia language.
Datseris/whyjulia-manifesto
Why Julia - A Manifesto.
BioJulia/BioSequences.jl
Biological sequences for the julia language
vtjnash/Glob.jl
Posix-compliant file name pattern matching
icbi-lab/nextNEOpi
nextNEOpi: a comprehensive pipeline for computational neoantigen prediction
BioJulia/FASTX.jl
Parse and process FASTA and FASTQ formatted files of biological sequences.
BioJulia/BioAlignments.jl
Sequence alignment tools
mossr/Tetris.jl
One-line Tetris in Julia
adashofdata/sql-crash-course
based on the first chapter of my book, SQL Pocket Guide (O'Reilly)
BioJulia/XAM.jl
Parse and process SAM and BAM formatted files
wwylab/MuSE
Somatic point mutation caller
carlobaldassi/FastaIO.jl
Utilities to read/write FASTA format files in Julia
ylab-hi/ScanNeo2
Snakemake-based computational workflow for neoantigen prediction from diverse sources
Xiao-Zhong/Scripts
Xiao-Zhong/Julia-Scripts
Julia scripts
Xiao-Zhong/Plastome-assembly
Automated Plastome Assembly Pipeline from NGS reads
Xiao-Zhong/Dada2Plot.jl
A Julia package can be used for statistics and visualization of Amplicon Sequence Variant (ASV) produced by DADA2.
Xiao-Zhong/nextflow
A nextflow workflow is to trim reads using BBDuk and assign the reads using Kraken2.