YangLabHKUST/STitch3D
Construction of a 3D whole organism spatial atlas by joint modeling of multiple slices
PythonMIT
Issues
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- 1
Some problems in Visualization of UMAP plots
#34 opened by lightoorange - 1
Cannot find CCFv3 dataset
#33 opened by lightoorange - 2
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Example 4 - KeyError: 'spatial'
#31 opened by Leroy-Xiong - 1
Fail to find several datasets
#30 opened by Leroy-Xiong - 3
unsupported operand type error in preprocessing
#29 opened by lillyzhan - 4
DLPFC dataset
#23 opened by cristalliao - 1
Mouse brain dataset
#28 opened by Super-LzzZ - 1
adult mouse brain dataset
#27 opened by chenyhvvvv - 2
install error
#26 opened by summus-kong - 7
TypeError: _detect_vcs() missing 2 required positional arguments: 'expected_vcs' and 'path'
#25 opened by pengpengyang94 - 1
Can not find latent variables
#24 opened by cristalliao - 2
Compare with other deconvolution methods
#22 opened by cristalliao - 4
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Cannot find CCFv3 dataset
#14 opened by cristalliao - 1
- 5
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Run without single cell RNA data?
#2 opened by vladimirkovacevic - 7
How can i find this file(genes_new.txt)
#1 opened by baoyulinn - 4
questions of using STitch3D
#18 opened by MingLi-929 - 1
- 2
Where is the code for Supplementary Information?
#16 opened by cristalliao - 1
Can't find seurat_clust_1620.txt
#15 opened by Peter-Fung - 3
where can I download 'seurat_clust_1620.txt' and 'cluster_anno_table.csv' files ?
#13 opened by Tidebear - 6
How can I find "results_6PCW" dataset?
#6 opened by cristalliao - 6
Cannot produce "results_human_heart_9PCW" and "results_human_heart_4.5-5PCW"
#9 opened by cristalliao - 2
- 4
Cannot run the code in "Visualizing results in 2D" and save "clustering_result.csv"
#7 opened by cristalliao - 1
How can I find "genes_new.txt" dataset?
#8 opened by cristalliao - 3
How can I find the file "all_cells_20200625.h5ad" and "snRNA_annotation_astro_subtypes_refined59_20200823.csv"?
#3 opened by cristalliao - 2
- 2