Pinned Repositories
2015-biogas-cebitec
Bremges et al. (2015). GigaScience, 4:33.
2015-pseudo
kgrep
Roughly speaking, a 'grep' for k-mers
MeCorS
Metagenome-enabled error correction of single cell sequencing reads
NanoSim
Nanopore sequence read simulator
sc
traitar
CAMISIM
CAMISIM: Simulating metagenomes and microbial communities
EMDUnifrac
Computation of Unifrac using Earth Movers Distance
2015-biogas-cebitec
Bremges et al. (2015). GigaScience, 4:33.
abremges's Repositories
abremges/andi
Efficient Estimation of Evolutionary Distances
abremges/alignment-and-variant-calling-tutorial
basic walk-throughs for alignment and variant calling from NGS sequencing data
abremges/Hack
A typeface designed for source code
abremges/Krona
Interactively explore metagenomes and more from a web browser.
abremges/command_line_bootcamp
Command-line bootcamp adventure in your browser
abremges/cytoscape.js
Graph theory (a.k.a. network) library for analysis and visualisation (compatible with CommonJS/Node.js, AMD/Require.js, npm, Bower, spm, jspm, Meteor/Atmosphere, jQuery, and plain JS/JavaScript)
abremges/UpSetR
An R implementation of the UpSet set visualization technique published by Lex, Gehlenborg, et al..
abremges/2015-pseudo
abremges/dnaplotlib
DNA plotting library for Python
abremges/holy-build-box
System for building cross-distribution Linux binaries
abremges/chrisquince.github.io
abremges/tufte-css
Style your webpage like Edward Tufte's handouts.
abremges/2015-biogas-cebitec
Bremges et al. (2015). GigaScience, 4:33.
abremges/paper-now
Create, edit and display a journal article, entirely in GitHub
abremges/tufte-latex
Automatically exported from code.google.com/p/tufte-latex
abremges/awesome-d3
A list of D3 libraries, plugins and utilities
abremges/Blast2Bam
abremges/bioboxes.org
The website for bioboxes
abremges/SinglePaged
SinglePaged - Simple Jekyll template
abremges/MED-Paper-Figure-6
A bunch of embarrassing ad-hoc python scripts to generate the alluvial diagram
abremges/sc
abremges/tabtk
Toolkit for processing TAB-delimited format
abremges/metagenomics-workshop
Metagenomics Workshop 2014-5-21 to 2014-5-23 at SciLifeLab, Stockholm
abremges/Lighter
abremges/annotaxor
Kraken-style taxonomic annotation using a protein database
abremges/Jellyfish
A fast multi-threaded k-mer counter
abremges/klib
A standalone and lightweight C library
abremges/makefile2graph
Creates a graph of dependencies from GNU-Make; Output is a graphiz-dot file or a Gexf-XML file.
abremges/gbproks
Prokaryotic Genbank Downloading and Processing Tools
abremges/seqSplitByNode
Some utility code for #basedev2014