adamewing's Stars
duckdb/duckdb
DuckDB is an analytical in-process SQL database management system
altercation/solarized
precision color scheme for multiple applications (terminal, vim, etc.) with both dark/light modes
wtfutil/wtf
The personal information dashboard for your terminal
morhetz/gruvbox
Retro groove color scheme for Vim
searx/searx
Privacy-respecting metasearch engine
ydataai/ydata-profiling
1 Line of code data quality profiling & exploratory data analysis for Pandas and Spark DataFrames.
Canop/broot
A new way to see and navigate directory trees : https://dystroy.org/broot
simonw/datasette
An open source multi-tool for exploring and publishing data
vaexio/vaex
Out-of-Core hybrid Apache Arrow/NumPy DataFrame for Python, ML, visualization and exploration of big tabular data at a billion rows per second 🚀
mamba-org/mamba
The Fast Cross-Platform Package Manager
KDAB/hotspot
The Linux perf GUI for performance analysis.
KDE/heaptrack
A heap memory profiler for Linux
sfu-db/dataprep
Open-source low code data preparation library in python. Collect, clean and visualization your data in python with a few lines of code.
vgteam/vg
tools for working with genome variation graphs
deeptools/deepTools
Tools to process and analyze deep sequencing data.
ericmjl/nxviz
Visualization Package for NetworkX
Illumina/hap.py
Haplotype VCF comparison tools
nanoporetech/bonito
A PyTorch Basecaller for Oxford Nanopore Reads
brentp/cyvcf2
cython + htslib == fast VCF and BCF processing
MariaNattestad/Ribbon
A genome browser that shows long reads and complex variants better
marbl/Winnowmap
Long read / genome alignment software
adamewing/bamsurgeon
tools for adding mutations to existing .bam files, used for testing mutation callers
harbourlab/SparK
Publication quality NGS track plotting
xie186/ViewBS
ViewBS - a powerful toolkit for visualization of high-throughput bisulfite sequencing data
daleroberts/hdmedians
High-dimensional medians (medoid, geometric median, etc.). Fast implementations in Python.
mlbendall/telescope
Quantification of transposable element expression using RNA-seq
mklarqvist/tomahawk
Fast calculations of linkage-disequilibrium in large-scale human cohorts
adamewing/tldr
Identify and annotate TE-mediated insertions in long-read sequence data
mehrdadbakhtiari/adVNTR
A tool for genotyping Variable Number Tandem Repeats (VNTR) from sequence data
adamewing/te-nanopore-tools
tools for plotting and parsing methylation aimed at TEs